LOCUS AK067649 1698 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013114G08, full insert
sequence.
ACCESSION AK067649
VERSION AK067649.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1698)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1698
/clone="J013114G08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 103..1395
/db_xref="Osa1:LOC_Os04g57400"
/db_xref="RAP-DB:Os04g0669800"
/note="(RAP Annotation release2) Methylthioribose kinase
(EC 2.7.1.100)"
/note="(Rice Genome Annotation Project) methylthioribose
kinase, putative, expressed"
/note="mapping to R04-TIGRv4S1-001252R (Chr.4: short
arm=33936476, long arm=33939588, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG90516.1"
/translation="MAAAAEQQQQQQQQGFRPLDEASLVAYIKATPALAARLGGSLDA
LTIKEVGDGNLNFVYIVLSDAGSVVIKQALPYIRCVGDSWPMTRERAYFEASALQKHR
GLCPDHVPEVYHFDRAMSLIGMRYIEPPHIILRKGLIAGVEYPLLAEHMADYMAKTLF
FTSLLYNSTTDHKKGVAQYCDNVEMCRLTEQVVFSDPYMLAKYNRCTSPFLDNDAAAV
REDAELKLEIAELKSMFIERAQALLHGDLHTGSIMVTPDSTQVIDPEFAFYGPMGYDI
GAFLGNLILAYFSQDGHADQANDRKAYKKWILKTIEDSWNLFHKKFVELWNKHKDGNG
EAYLPPIYNSSELLCLAQKKYMTSLFHDSLGFGSAKMIRRIVGIAHVEDFESIEDASK
RASCERRALNCAKAILKGRRQFESIGQVIVHVQSFDRD"
BASE COUNT 409 a 451 c 429 g 409 t
ORIGIN
1 gacacgcgca ctcgattccc cactcctctc gcgggtcgcg gccacttcgc cgccggcgct
61 cgcatcggtc aactcgacgc cacggccaca cacgcaccgg ccatggccgc ggcggcggag
121 cagcagcagc agcagcagca gcagggcttc cgcccgctcg acgaggcgtc cctggtggcc
181 tacatcaagg ccacgcccgc cctcgccgcg cgcctcggcg gcagcctcga cgccctcacc
241 atcaaggagg tcggcgacgg caacctcaac ttcgtctaca tcgtcctctc cgacgccggc
301 tccgtcgtca tcaagcaggc gctgccgtac atccgctgcg tgggggattc gtggccgatg
361 acgagggagc gcgcctactt cgaggcctcc gcgctgcaga agcaccgcgg cctctgcccg
421 gaccatgtcc ccgaggtcta ccacttcgac cgggccatgt cgctgatcgg gatgcgctac
481 atcgagccgc cacacatcat cctccgcaag ggcctcatcg ctggcgtcga gtacccgctg
541 ctcgccgagc acatggcgga ttacatggcc aagacgctct tcttcacctc ccttctctac
601 aactccacca ctgatcacaa gaaaggagtt gctcagtact gcgataatgt ggagatgtgt
661 aggctcacag agcaagtcgt gttctcagac ccatacatgc tcgccaaata caatcgttgc
721 acatcaccct tcctagataa tgatgctgca gcggttcgag aggatgctga gcttaaattg
781 gagattgctg aattgaaatc aatgtttatt gagagagcac aggctcttct tcatggagat
841 ctccacactg gttccatcat ggtgacacca gattctactc aagtgattga tccagaattt
901 gctttctatg gcccaatggg ttacgacatt ggggccttcc tggggaactt gattttggca
961 tatttttcac aagatggaca cgctgatcaa gcaaatgatc gtaaggctta caagaaatgg
1021 atcttgaaga caattgaaga ttcatggaat ttgttccaca agaagtttgt cgaattatgg
1081 aataaacaca aagatgggaa tggggaagca tacctgcccc ctatatacaa cagctcagag
1141 cttttgtgcc ttgcacagaa gaagtacatg acaagcctat ttcatgacag tcttggattt
1201 ggttcagcaa aaatgatcag gagaattgtt ggaattgctc atgttgagga ttttgagtcg
1261 attgaggatg ccagcaagag agcttcgtgt gagcgacgtg cccttaattg tgcaaaggca
1321 atcctgaagg gaagacgcca gtttgaaagc atcgggcaag tgattgtgca tgtacaatcg
1381 tttgatcggg actgataatg ccaaccatct acacgacctt tctgattgag gagacaaaag
1441 ttttcatctg tttaccataa gcgattatct gtgcctatta caaagcagaa ttggccagtt
1501 atttgtgctt ttagtacttt ggatcatgaa aagtgtgtgc actctgcaag atcgatgttt
1561 tttttcacca cttggctaag ccttccacca gcttccgggc ttcttagttt atgagctgaa
1621 taatggaagt tcagcacaaa cgtttgtcca tggatatgga cgagtgtgtt attacaaata
1681 aagttgatag ttttcggc
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