LOCUS AK067640 2096 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013110N01, full insert
sequence.
ACCESSION AK067640
VERSION AK067640.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2096)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2096
/clone="J013110N01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2096
/db_xref="Osa1:LOC_Os08g45130"
/db_xref="RAP-DB:Os08g0565700"
/note="(RAP Annotation release2) SRA-YDG domain
containing protein"
/note="(Rice Genome Annotation Project) histone-lysine
N-methyltransferase, H3 lysine-9 specificSUVH9, expressed"
/note="mapping to R08-TIGRv4S1-000945R (Chr.8: short
arm=28208176, long arm=28210268, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 415 a 746 c 559 g 376 t
ORIGIN
1 gatcaaaccc aaaccctcac caatggcgtc tccgccgccg ccgcctcgcc tcctcactcc
61 caagcccgac cccgacgccc ccctaccccc gctcccttac cccgacccca acctcgtcca
121 aagcatgctc ttctccgccc agtccccgca ggcgcagccg caggcgccgc caccccacat
181 ccaacccccc gcctccgcct ccgccgaggc cccctccggc gacgagaaga ataagaagaa
241 gaagaagcgg gcccgcgcct cccaggagat ggtgcgcatc accaacctta gcatcgccga
301 ccacctccac taccgctccc tcgtccgccg cgcccgcctc accttcgagg ccctccgcgc
361 catctaccaa cgccagggcc tcgccaccgc cgggggaatc cgcaaccgct tcgacctccg
421 ggcctccagc aagatgctct ccaagggcct ctggatgcac cgcgacatcc gcaccgtcgg
481 ctccatcccc ggcctccccg tcggggactc cttcttctac cgcgccgagc tctgcgtcct
541 cggcctccac accgcccctc aggccggcat cggctacatc cccgccagca tcgtcgacca
601 gggccacccc gtcgccacca gcatcgtctc ctccggggga tacctcgacg acgaggacag
661 cggcgacgtc ctcgtctact ccggcagcgg cggccgcctg cgcaaccgcc tcgaccacag
721 cgccgaccag acgctccagc gcggcaacct cgcgctccac tacagctgcc actacggcat
781 cgaggtgcgc gtcatccgtg gccacgcctg cgaccacagc cccagcagca aggtctacgt
841 ctacgacggc ctctacaggg ttgtcacctc caccttcggc cctggcaaat ccggccgcga
901 cgtctgcaag ttcaagctcg tgcgcatccc tggccaggac gacctcggca gcaaggcctg
961 gcataccgca gcggagctca aggatgcact ggattccaag atccgcccgc ccaagtacat
1021 ctcgctcgac attgccaagg gcaaggaacc attccgcgtg cccctctata acaagctcga
1081 cgacgacagg tcacccctct tctacgacta cattgcctgt cccgacttcc ccaccaccca
1141 gcagctgctc aaacgccaga cccagagggg ctgccactgt gccgagctgt gcggctccag
1201 gtgcagctgt gagaggaaga acaggggggc cgacggccct gtgtacacct ccgatggcat
1261 ccttctcagg ggacgcccct tggtgtacga gtgcggaccc ctgtgtggat gccccatgac
1321 ctgtcccaac agagtcacac agcaagggat gaagcaccgc ctcgaggtgt tccgttccaa
1381 ggagacaggc tggggtgtca ggacgcttga cttgatacag ccgggtgcct tcatatgcga
1441 gtacgccggc gacgtgctct ccttggacag ccactcaggt gacgcccctc tgcctccgat
1501 ggaggacggg agctccatca tcgacccgac caagttcccc gagagatgga gggagtgggg
1561 agatgcatcc gtggtttacc cggacagggt accccatttc cccctatttg caggggcgcg
1621 ctaccgactc gacgtgtcac agaggaggaa cgtggcttgc tacattagcc acagctgcag
1681 tccgaatgtg ttccttcaat atgtaatccg tggcaatgag gatgaatcct accctcacat
1741 gatggtgttt gccatggaga ccatccctcc aatgcgggat ctgtccatcg actatggctt
1801 ggactagggt ccatgagggg ggaggaggga tcaatggctg gtaactggtt ttggcgggct
1861 gaggcaacgt taggaagctg caaatggccc cacagacagt tggctcgtct ttttggatat
1921 tttgtaggtg agcaggtatc tctttttggg tacccatagt gctctcattt tggggtaact
1981 agggtgcaat tgatgagttt gttctaggat tggcatgaat gaagaacttt gctaggtagc
2041 aaaaggggcg catcaatact gcatcactgg aaagaactat tcaaaaccat tagttg
//