LOCUS AK067637 2623 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013109I22, full insert
sequence.
ACCESSION AK067637
VERSION AK067637.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2623)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2623
/clone="J013109I22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2623
/db_xref="Osa1:LOC_Os03g11500"
/db_xref="RAP-DB:Os03g0213700"
/note="(RAP Annotation release2) Protein of unknown
function DUF647 family protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R03-TIGRv4S1-000360R (Chr.3: short
arm=5934521, long arm=5939647, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 614 a 562 c 631 g 816 t
ORIGIN
1 ggtcttgagc tgagcagaag cccgcgacgt gccctgcact gcacgcggaa gcagagctcc
61 gagccgtggc ggcggcgggc gcggggcggc gtccgatcca gatccgcgcc gccggcgtgg
121 gcggccggct tacgaggtgg tgggcgactg gttggcatca tggactcctc ccgcttccgg
181 agtgcggcgg ccacggaggc ggcggaggag gaggcggcgg ggtgggtgac ggtcgaggag
241 tgggcgggct cctccgccgc cgcgctctcc cgcaccgccg tcctcaccgc ctccccctcc
301 tcctccctcg cgtcccgcag gttcggaagc cggtgggggc gggtcggcgg ccggctgctc
361 ggcgccttcg tgcccgaggg ctttcctggg agcgtcactc cggattacgt cccgttccag
421 atgtgggata ccttgcaggg tctctcgact tacatccgtg caatgctgtc tactcaagct
481 cttttaggcg ctattggagt aggtgagaaa tctgccacgg ttataggtgc cacttttcag
541 gtaaatttcg atttcatgtc atggtttagc cttctgcagt ttttcttagg agctaggcat
601 aacgtaaatg gtttctgatg agcatatgtt aacttctttt tgtgtcttaa atttgtgcat
661 atatgaaata gattgcttag gttgttgttt tcattgccct gagctgcagt cagctggtag
721 taacttgctc tgcagtctag tatgtgtttt cccccctcaa ttttcttctt ttatgggctt
781 agtttcaatt tcctcatcat ctttaattac atgctattct tgcagtggtt tctcagggat
841 ttgacaggaa tgctcggtgg tatactgttc actttttatc aggtgtcaaa ttctcttgct
901 aactcgaata ggcaatgcca tcttattgcc attgatagtt tgtttactga tgagataact
961 tgcttggtca gtattttatt tgtctatagg gtgtactaat tctttgtgct ttcacttttc
1021 ccagggatct aaccttgata gcaatgctaa aatgtggcgc ctagttgcag actttatgaa
1081 tgaccttggt aatatagtct atatcagtaa tcgctgtatt aattctttga atgcgggcgt
1141 ctaatttaaa ggtcctgcaa tcgtttggta tttatattca agactaagca ttcatttttc
1201 ttttgaggta ttctgctata gtaggtgaat attaaatagc atatgtgtca catgcccctg
1261 caaatgcatt tcacatggaa tctggattta aaaaatcctt tgtttaatgc gaattccttg
1321 tagtatcaaa gtatgctagc agagtttgtt tgttggtttt gcagggatgt tgatggatct
1381 cttaagccct ctgtttcctt catcattgat tgttataatg tgtttaggca gcctatctcg
1441 atccttcact ggtgttgcta gtggagcaac tagagcagcg ttaacccagc attttgcact
1501 tgccaataat gcagctgata tatctgcaaa gctgcagaag catactcaac ttttcaggag
1561 ggcagtcagg agacacttgc aacaatgtta ggaatgggac tgggaatgct tcttgcccat
1621 gttaccagag ggcatgcttt gggtgtatgg gtttcattcc tttctctaac gatattccat
1681 atgtatgcaa attacaaggc agtgcagtca ctttcactca caacactaaa ttatgagaga
1741 agttccatcc tgctgcagta cttcatggac aatggtgaag tcctcacacc acaacaggtt
1801 tccaagcaag agcatattct tccatattgg tcaagctggc ggaaatttct tagaattaaa
1861 ctgccacatg agcatgtaca tttaggtgct aaagcctcaa ggcttacaca ccctgatttg
1921 taagtactaa gttttgagtt atgcttttat gtgtttatca ctctatgggg gaagaaacat
1981 ttactctgtt tgtcaaattt gataggctgc agattgcaaa aacaaggccc tactatagaa
2041 atggtataac tcgtctcttg gttaatgtaa cactaaacta actgttgctg acttttcttt
2101 tacttcacaa atctattcag agaactattt cttgctggat aaggaaggca gtgttcacat
2161 tttcatccac aagcaggcag cggcaacaga tattttgatg tccttcatac atggactcgt
2221 gttagcacat ttgatgcaga agagcaaatc tgggcatgcg gaggctcgcc aatggattga
2281 tgagaaatat aacactttta tctcaaagtt gcaagttgaa ggttactcaa cagagcgact
2341 tctttcacac tcgatcgtgt ggagggcaca ttgggttcat ggtccctctg aagagaagct
2401 cgagtaggag gaagcaggcg aaggtagcag tatctgttca acgcgatatt attagagcaa
2461 ttcgacatac tgcataggat gctttgcata tctcgtttgt ttccgttcgg aattgccact
2521 tttcaccatg gagttgcact gcatcttgta atcgcatggg atatacttta aaagctatac
2581 ttgataataa tactattaaa tgatatagca aatggtttcg ttg
//