LOCUS AK067339 1490 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013102O17, full insert
sequence.
ACCESSION AK067339
VERSION AK067339.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1490)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1490
/clone="J013102O17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 190..1299
/db_xref="Osa1:LOC_Os03g17700"
/db_xref="RAP-DB:Os03g0285800"
/note="(RAP Annotation release2) MAP Kinase"
/note="(Rice Genome Annotation Project) OsMPK3 - putative
MAPK based on amino acid sequence homology, expressed"
/note="mapping to R03-TIGRv4S1-000584R (Chr.3: short
arm=9826773, long arm=9829435, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG90374.1"
/translation="MDGAPVAEFRPTMTHGGRYLLYDIFGNKFEVTNKYQPPIMPIGR
GAYGIVCSVMNFETREMVAIKKIANAFNNDMDAKRTLREIKLLRHLDHENIIGIRDVI
PPPIPQAFNDVYIATELMDTDLHHIIRSNQELSEEHCQYFLYQILRGLKYIHSANVIH
RDLKPSNLLLNANCDLKICDFGLARPSSESDMMTEYVVTRWYRAPELLLNSTDYSAAI
DVWSVGCIFMELINRQPLFPGRDHMHQMRLITEVIGTPTDDELGFIRNEDARKYMRHL
PQYPRRTFASMFPRVQPAALDLIERMLTFNPLQRITVEEALDHPYLERLHDIADEPIC
LEPFSFDFEQKALNEDQMKQLIFNEAIEMNPNIRY"
BASE COUNT 343 a 442 c 406 g 299 t
ORIGIN
1 gagcgatcac aaattgtgcc aattcacaaa ccgccgcccc cttccctttt taatagctgc
61 cttcgcctct cgtcccctct ccctcatcgc cttgctgtct ctgcgaatcg agagagagtc
121 agataaggtc gttaattagg tttgtcaatt cggctgcttg cggcgagaga agaggaggag
181 ggattaggga tggacggggc gccggtggcg gagttcaggc cgacgatgac gcacggcggc
241 cggtacctgc tctacgacat cttcgggaac aagttcgagg tgacgaacaa gtaccagccg
301 cccatcatgc ccattggccg cggcgcctac gggatcgtct gctccgtgat gaactttgag
361 acgagggaga tggtggcgat aaagaagatc gccaacgcgt tcaacaacga catggacgcc
421 aagcgcacgc tccgggagat caagctcctc aggcacctcg accacgagaa catcataggc
481 atcagggatg tgatcccgcc gccgatccct caggcgttca acgacgtcta catcgccacg
541 gagctcatgg acaccgacct ccatcacatc atccgctcca accaagaact gtcagaagag
601 cactgccagt atttcctgta ccagatcctg cgggggctca agtacatcca ctcggcgaac
661 gtgatccacc gcgacctgaa gccgagcaac ctgctgctga acgccaactg cgacctcaag
721 atctgcgact tcgggctggc gcggccgtcg tcggagagcg acatgatgac ggagtacgtg
781 gtcacccggt ggtaccgcgc gccggagctg ctgctcaact ccaccgacta ctccgccgcc
841 atcgacgtct ggtccgtcgg ctgcatcttc atggagctca tcaaccgcca gccgctcttc
901 cccggcaggg accacatgca ccagatgcgc ctcatcaccg aggtgatcgg gacgccgacg
961 gacgacgagc tggggttcat acggaacgag gacgcgagga agtacatgag gcacctgccg
1021 cagtacccgc gccggacgtt cgcgagcatg ttcccgcggg tgcagcccgc cgcgctcgac
1081 ctcatcgaga ggatgctcac cttcaacccg ctgcagagaa tcacagttga ggaggcgctc
1141 gatcatcctt acctagagag attgcacgac atcgccgatg agcccatctg cctggagccc
1201 ttctccttcg acttcgagca gaaggctcta aacgaggacc aaatgaagca gctgatcttc
1261 aacgaagcga tcgagatgaa cccaaacatc cggtactaga ttgaatcacc atggaaatga
1321 gatcccgtct atacctgctt tgtacatatg atcaagattg agagccgggt agactgaaca
1381 ttgcatttgt ttgtttgttg atgttcgaaa cccacattct ctgcaagttg tggctgcttt
1441 gtatgatata tggtactatg ttcgaataaa agggtttgga actttggatt
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