LOCUS AK067302 3100 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013102H14, full insert sequence. ACCESSION AK067302 VERSION AK067302.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3100) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3100 /clone="J013102H14" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..3100 /db_xref="Osa1:LOC_Os05g04330" /db_xref="RAP-DB:Os05g0133900" /note="(RAP Annotation release2) Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1)" /note="(Rice Genome Annotation Project) DNA methyltransferase DMT106, putative, expressed" /note="mapping to R05-TIGRv4S1-000107F (Chr.5: short arm=1943619, long arm=1952912, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 854 a 683 c 799 g 764 t ORIGIN 1 ggcgcatctt cccccttttg gaatcgcccg gtccccatct ccacttcgaa ccaaacccgg 61 aggcgcgccg cgcgcctccc cgccgccgcc gtcgagcggg aggggatcgg agcgcgcggc 121 cgccgccgtc gccgagtccg tccgacctcc gtcccccgcg ccaacgcagc agcagagcag 181 cagtgtggga aggaagaagg gaagccgctg ccgcgagcgg cgagcgggag tgggggtttc 241 tccattgtta ccatttcagg ccagccgccg tcgacgccga ggcggggtgg gccccacctg 301 tcactggcca tgttcgcctc tatatatata caccgcgccg ccccccttcc gccgccaacc 361 tgagccgagc ggggagacgc gtcttcctcc tcctcctcct ccattgctgc tccccctccc 421 ccttcctcct acaggggcat gcgattttgg aagcggagtt gatacttgat cgagatggtt 481 aaagtagaag atgatgtgga gggcagtggc atcaacgctt ctgttggtga tctcagggat 541 gctgctgtca atccacagcc tgccctgctg cgtgctactg ttaaggagga ggaaggacag 601 ccaagctctt cctccagtca tgtaagatca caatttattg gcatggggtt ttcaccaatg 661 ttggttgaca gggtgcttca gaaacacggt gacagagatt cagatactat actggaggct 721 cttttgtcac agtctgctct tcaaaaatct gggtctgaat caggttcatt gggagatctc 781 tttgattctg ataatgaaga aaatagttct cattttgcgc ctaggaaaga agttatccaa 841 gacattaagg ttggagctga ttcatcctca gaaaagagat catatctact gagtacaatg 901 aacttctcgc agcgagaagt tgatttggca ctcaaccagc taggtgagga agcatcattg 961 gaacagcttg tagatttcat tgttactggt caagtgtcag gttgctctgg aggaaacgaa 1021 aatggagatg cttcaaatga ggtaaaggat gaatcactgt ttggagtaat ggataaaaca 1081 ctacatttac tccagatggg ttttacggag gaagaagtgt catctgtcat tgacaaagct 1141 ggtccagaag caacagtttt ggagctggct gacaccattt ttgcacgtag aattgccagt 1201 agcattgagc agaaagaggt gaaagttgag cctgactttc tagatgagac agaaaccagc 1261 tattcagcat accatccctc aaattctggt ctaaggtact atgatgacga ccatgacaac 1321 ataaggatta aaagggctaa gcatatgttt atagatgaca gtgcgggttc cagtagtcgt 1381 gctggaaatc aacctttaga tccatggctt aaggatcacc gtgccacaac tagtgatggg 1441 tctgtcaagg aagaatttga tgcaatgaca ccaggcatcc gtagaaatgt tcgcagtgat 1501 gtcgccaatc ccccatattt cttatatgga aatgttgtag aaattcccaa agctacatgg 1561 cgtcagctgt cagagttctt atataatgtg gagccagagt ttgtaaatag ccagtttttc 1621 tcggctctct cacgaaagga gggttacatt cataaccttc caacagaggg aaggcgtaac 1681 ctggttccta ggtcaccaat gactatcgaa gaagcattcc cattcacaag gcagtgctgg 1741 ccatcgtggg acacaagaaa acaacttaac agtgttgcta cagaagttgc aggaatagag 1801 cagctgtgtg agagactggg aaagatggta agagactcag gaggttatct ttcacaagaa 1861 aagaaaacgc acatcatgca ccagtgcaag ctggctaacc tcatctgggt tggcccagat 1921 aggttaagtc ctttggatcc acaacaagtg gaacggatac ttggctaccc acggaaacac 1981 acaaacctgt ttggcctgaa tccacaagat agaatagaag ccatgaggta cagtttccag 2041 actgacacac tcggctatct tttgtcagtc ctgaaggacc tgtatccaga tgggctaagg 2101 gtgctatcaa tctacagtgg aattggaggt gcagcaattg ccctccatcg cctagggata 2161 ccactacagt gtgtagtatc tgttgaccaa tctgatacga acaggaaaat tttgagaagg 2221 tggtggagta atactgaaca aaaggggcaa ctgaggcaga taaataccat ttggaagctg 2281 aagattaatg tacttgagga cctggtgaaa gaatttggtg gttttgacat aattattggt 2341 ggaaacttca gttcctgtaa aggtggtaca acagtaaact catccatggg catggattcc 2401 aaccagtttt ttgagtatgt tcgtgttgtt caaagagtga agcatataat gggtcggctc 2461 cagaaccgtg gatgattttt tggttacacc ggcagcagca aagtgggagg ggggaaaaga 2521 atacgcggcg tcagaatctc ggacaaaaaa atgtagttcc acttccatat gcaccagctt 2581 tcccaaatgg ctgcacacag ggttcatctc tgctttctaa tggaggacgg tgaagaaatt 2641 ctgaactagt tttcatgctg acctcagaaa tcaccatcct acaaacgcgc attgctttcg 2701 agcatgttcg gggataagct tcaccaggaa ttccattggc atacccttca gttctgttca 2761 aatcggccag attagtagat aattataagt tgatcggtgg ttcagaaatt ttcgtctacg 2821 catgtcatat gtcagccggt gttgcaagct taccatgggg cttgaagttg aagagaggag 2881 gaaggaaacg gccgttcggt aagcgggtgt ttggatcacg gagttcatcg aagaagggat 2941 ggatcaatgc ttccgactgt aatggcaaat aaagaaatgc acaatctgta actactagta 3001 cttggcaagg cagtgcatgt ttgtatgatg aagtaattag aaaaatgtaa cacaatagtg 3061 atgccaagaa ctaaaacttt ctctaaaaaa tggtgttggc //