LOCUS AK067296 1929 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013102O07, full insert
sequence.
ACCESSION AK067296
VERSION AK067296.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1929)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1929
/clone="J013102O07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 192..1604
/db_xref="Osa1:LOC_Os04g32110"
/db_xref="RAP-DB:Os04g0391500"
/note="(RAP Annotation release2) Similar to ACR4"
/note="(Rice Genome Annotation Project) ACR4, putative,
expressed"
/note="mapping to R04-TIGRv4S1-000387F (Chr.4: short
arm=19081824, long arm=19083910, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG90355.1"
/translation="MALTAAAASGGDAHDDEYAKLVRGMNPPRVVVDNEACDEATVIR
VDSVSSHGTLLAVVQVIADLGLVIRKAYFSSDGSWFMDVFNVTDRDGNKVLDDQTISY
IQTTLEADDWYYPEVRNTVGIVPAEEYTVIELTGTDRPGLLSEVCAVLAGMRCAVRSA
ELWTHNTRVAAVVHVTDDGGSGGAIEDEARIADISTRLGNLLRGQSGVRAAAAAAPGG
LTHKERRLHQMMFDDRDYDGGGGAASSSPRGRSPTPATEVSVTPCAERGYTAVVVRCR
DRPKLLFDTVCTITDMGYVIHHGAVSSEPRGGAYQEYYIRHVDGDPVRSEAERQRVVQ
CLEAAIERRTADGLALEVRTGDRAGLLSDVTRIFRENGLTIRRAEISSERGEAVDTFY
LSDPQGHPVEAKTIDAIRAQIGEATLRVKHNPFADGDGAGGGGGGATDDVAGSTAFLF
GNLFKFYRPFQNFSLIKLYS"
BASE COUNT 374 a 613 c 605 g 337 t
ORIGIN
1 ggggagaaga gtcgtggctt cctcgcacag ataaaaaggc gaggaggcat ttccccggtt
61 tcctctctgt ccgggtccag gccagcacga actacgccca caacgaactt ttagctgtgt
121 ttagcttaag ccacccacca ctcgcactcg cgtacgtact cgtcgcatgt gagttagctt
181 tggtcgccgg catggcgctc acggcggcgg cggcgagcgg cggcgacgcg cacgacgacg
241 agtacgcgaa gctggtgcgg gggatgaacc cgccgagggt ggtggtggac aacgaggcgt
301 gcgacgaggc gacggtgatc cgggtcgaca gcgtcagcag ccacggcacg ctgctcgccg
361 tcgtccaggt catcgccgac ctcggcctcg tcatccgcaa ggcctacttc tcctccgacg
421 gcagctggtt catggacgtg ttcaacgtca ccgaccgcga cggcaacaag gtgctcgatg
481 accaaaccat ctcctacatc caaacgacgc tggaggcgga tgactggtac tacccggagg
541 tgaggaacac ggtggggatc gtgccggcgg aggagtacac ggtgatcgag ctcaccggca
601 ccgaccgacc ggggctcctc tccgaggtgt gcgcggtgct cgccggcatg cgctgcgccg
661 tgcggagcgc cgagctgtgg acgcacaaca cccgcgtcgc cgccgtcgtg cacgtcaccg
721 acgacggcgg ctccggcggc gccatcgagg acgaggcccg catcgccgac atcagcaccc
781 gcctcgggaa cctcctccgc ggacagagcg gcgtgcgcgc cgccgccgcc gccgctccgg
841 gcgggctcac ccacaaggag cgccgcctcc accagatgat gttcgacgac cgcgactacg
901 acggcggcgg cggcgccgcc tcctcctcgc cgcgggggcg gtccccgacc ccggcgacgg
961 aggtgtccgt gacgccgtgc gcggagcgcg ggtacaccgc ggtggtggtg cggtgccggg
1021 accggcccaa gctgctgttc gacacggtgt gcaccatcac cgacatgggg tacgtcatcc
1081 accacggcgc ggtgagcagc gagccccgcg gcggcgcgta ccaggagtac tacatccggc
1141 acgtcgacgg cgaccccgtc cgctccgagg cggagcggca gcgcgtggtg cagtgcctcg
1201 aggccgccat cgagcgccgc accgccgacg ggctggcgct ggaggtccgc accggcgacc
1261 gcgccggcct cctctccgac gtcacccgca tcttccgcga gaacggcctc accatccgcc
1321 gcgcagagat ctcgtcggag cgcggcgagg ccgtggacac gttctacctc tccgacccgc
1381 agggccaccc cgtggaggcc aagacgatcg acgccatccg cgcgcagatc ggcgaggcca
1441 cgctgcgtgt caagcacaac cccttcgccg acggcgatgg cgccggcggc ggcggcggcg
1501 gcgccaccga tgacgtcgct ggctcgacgg cgttcctctt cgggaatctc ttcaaattct
1561 accggccgtt ccagaacttc agcctcatca agctctactc ctaattaatt tactccaacc
1621 tgggttaatt aattagctgt aaataattac ttagttagtt agttttatgt ttttttcttc
1681 tagattttac tgtaaatatg atttcagatt tatgacgacg acgaagatga tgtaggctgg
1741 gtggtgtaaa taggtttaca catggtacaa aacatagggg gaaagttaat tcaaaattta
1801 ggtcagggaa aaaaaatcat gtaggattag tttcatcagt atactggcat tgggggtata
1861 cagtcgctaa atattccatc ttgtacatgt attcatggaa ggaatacaaa gaatgaaaca
1921 aaagcttgt
//