LOCUS AK067289 1759 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013103K22, full insert sequence. ACCESSION AK067289 VERSION AK067289.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1759) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1759 /clone="J013103K22" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 105..1592 /db_xref="Osa1:LOC_Os08g15840" /db_xref="RAP-DB:Os08g0258200" /note="(RAP Annotation release2) Zinc finger, RING-type domain containing protein" /note="(Rice Genome Annotation Project) XBAT32, putative, expressed" /note="mapping to R08-TIGRv4S1-000323R (Chr.8: short arm=9622276, long arm=9626367, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG90353.1" /translation="MGLLGMVGDSFGCSATGERLVSAARDGDIQEAMALLELNPRLAR YSTFGIRNSPLHYSAAKGHHEIVSLLIESGVDINLRNCRGQTALMQACLYGHWKVVQI LVLFKANIHKKDCFSGATAIHFAALKGHTRCLRLLVADYVPSLPEFWSVMHAKCTDET NKEAFDAVALRRLINNKSDGGVTPLHLAALHGHAECVQLLLDLGASVSEVTINDGSTI DLIGSGSTPLHYAACGGSAVCCQLLVAAGANMRAQNTNGLTPLMVARSWHKSSVEGIL TKRSEVPVRILPSSYLSLPLMSIVKIARECGWRKTSVSSVCHDPCAICLDTECTVSAE GCGHEFCTKCALYLCATASSSTSIRGVPGSIPCPLCRHTIVSFVRLTSTTPIKELPWT NKSLALCAAGASTGSKYAGPAAITSSKYAGSLHRRSEMRSLRSSSVDLGCSSFRTASS GKLSSIKLNCTGADETMPCLVNCFRPDVQRSSSYRERIRRYSQFS" BASE COUNT 397 a 421 c 432 g 509 t ORIGIN 1 gaatattgta gttcctacta caggctctcc attctcgttg ccttgctagc tagccttggc 61 ataggaatcc tttgattgtt ttgtaggtcc agggtagacg catcatgggg ctcttaggta 121 tggtgggcga ctcattcggt tgctcagcta ctggtgagcg gcttgtctct gctgcaaggg 181 atggagacat ccaggaggct atggccctgt tggagcttaa cccccgactt gcgcggtatt 241 caacgtttgg gatccggaac tcaccccttc attactcagc agcaaagggc caccatgaga 301 ttgtttctct cctaattgag tctggtgttg atatcaacct caggaactgc agaggacaga 361 ctgctctaat gcaagcttgt ctatatggtc attggaaagt tgtacagatc ctagttcttt 421 ttaaagctaa tattcacaaa aaagattgtt ttagtggcgc gacagctatt cattttgccg 481 ccctaaaagg tcatactcgg tgccttcggc tccttgtggc tgattacgta ccaagcttgc 541 cagaattttg gagtgtaatg cacgcaaaat gcacagatga aacaaataag gaagcttttg 601 atgcggtagc tctccggagg ctaataaaca acaagtctga tgggggcgtc acaccgcttc 661 acttggcagc ccttcatggg catgctgagt gcgtgcaatt gctgttagac cttggagcct 721 ctgtttcaga ggtcactatc aatgatggtt caactattga tctcataggt tcaggaagca 781 cacctctcca ctatgcggcc tgtggtggaa gtgctgtatg ctgtcaactt cttgttgcag 841 ccggagcaaa catgagagct caaaatacta acgggttgac ccctttgatg gtggctcgtt 901 catggcacaa aagtagtgtt gaaggtatcc taaccaaacg gtcagaagtt ccagtacgca 961 ttcttccatc atcatatctg tctctcccac tgatgagcat tgtcaaaatt gccagggaat 1021 gtgggtggag aaaaacttct gtctcatctg tttgccatga cccatgcgcc atatgtttgg 1081 atacggaatg tacagtgtct gcagaagggt gtggccatga gttctgcacc aaatgtgcgc 1141 tctacttgtg cgccaccgct agcagctcaa catctatccg tggtgttcct ggctccatac 1201 cttgcccttt gtgccgccac acgattgtct cattcgttag actcacaagt acaaccccaa 1261 taaaggagct tccgtggacg aacaaatcgt tagctctatg tgcagcaggg gcaagcaccg 1321 gttccaaata tgctggtcct gcagcaatca ctagttccaa gtatgccggt tctttgcacc 1381 gaaggtctga gatgcgcagc ctgcgctcct cttcagttga tctaggctgc tcatcgtttc 1441 gaaccgcgag ctcagggaag ctgtcgtcga taaagctgaa ttgcaccgga gccgacgaga 1501 cgatgccctg cctcgtcaat tgcttcaggc cggatgtgca gcggtcgtct tcgtataggg 1561 aaagaattag gagatattca caattttcat agcattactg tctatttgta tttgtgcctc 1621 ccatccattt tgtgagtttc cgggggtttg gcagtacaaa cttgtgcagt gtttgttcat 1681 gcttttctct tggcttcttc atacctgtag tctgttctgt tcttctgctt gtggtcttgt 1741 aacatgacat gtgatcctc //