LOCUS AK067253 2513 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013098K11, full insert
sequence.
ACCESSION AK067253
VERSION AK067253.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2513)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2513
/clone="J013098K11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 183..515
/db_xref="Osa1:LOC_Os06g12790"
/note="(Rice Genome Annotation Project) rac-like
GTP-binding protein 4, putative, expressed"
/note="mapping to R06-TIGRv4S1-000357F (Chr.6: short
arm=6989946, long arm=6993305, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG90335.1"
/translation="MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDN
FSANVVVDGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVMKKV
QKKKISCN"
BASE COUNT 722 a 491 c 499 g 801 t
ORIGIN
1 gatagacagt agtgagaaca gttcagagag gaagcatgtg acacttccct ctgtccctct
61 ctctctctag cctccaacca tcgcttcacc aagaagccat cacctcctcc tctctatcaa
121 gttctctccc ctctcttgct gtctctgctt gctgctgctg ctgctcgatt cggccggcgg
181 ccatggcgtc cagcgcgtcg cggttcatca agtgcgtcac ggtcggggac ggcgccgtcg
241 gcaagacctg catgctcatc tgctacacca gcaacaagtt ccccactgat tacgtaccca
301 ctgtttttga caatttcagt gcaaacgtgg tggtcgacgg caccacggtg aatttgggtc
361 tctgggatac tgcagggcag gaagattaca acagattgag gccgctaagc taccgtggcg
421 ccgatgtctt tgtgcttgcc ttctccctag tgagccgagc tagctatgag aatgtcatga
481 agaaggttca gaaaaaaaaa atctcttgca attaatctgt taaacccata atgtggatgc
541 attcagagag attcagtatt tcagttaggt ttaccttgtg ctttttgtcc ccttgaagtg
601 gttaccagag cttcagcatt atgcaccagg ggtgccaatt gtgttggttg ggaccaaatt
661 gggtgagttg tgtgacagtg aaagcacaat ttccatttta ttgcatatcc ccttggctgt
721 gataatagaa ctggtgtgct gtacatcctc tgtctaagct tgtcacttgc tggtagtgat
781 ttggatgatt ttgtcttttc attcttggag catggaattg tgtggtccct aaaaatattg
841 atggacctat aatagttact ataactcacc aagatttagt ccttgcgatg tttaagtagg
901 aactattgca ttttgtacgt tctgtcttgt accttgccag tagtatttca ccggctcgga
961 tcaatttacc ttatcactgt tggattatga ttcctcaagg aattgtttgg aactatctta
1021 atttttattt cactaagatt agttgcacta cattatttta ttttctctga acaaaataaa
1081 agtaaatcgt agttaaaaaa agagaggcaa ggtttatgaa tgagccaatg aggtttcttt
1141 ctcttttttt ttcactcaaa caatttcaaa acctccataa ttgatgtttg gaaataccaa
1201 ttcttgtttt cttcaaatgg aaaagtccaa ctacctcctt aaacttatga tagaagtcca
1261 tttagcacgt tgaactttaa aaccggacaa ccaaccccct aaactttgca atgccgttta
1321 tataacctcc taaggtgatt ttgaatagtg gttttacgta tttgggatct taaacaagca
1381 gctttaaata acttatataa tacatttatg tatcatcaat tgtagtttgt caatttataa
1441 tatagagtga tgtcatatta tttttacaat ggtataagtg agagcgaaca agggataaaa
1501 agaaatattt aagtgaaaat tttaacatat gcgtatgtca catgatcaaa gctcatccaa
1561 tttatatgcc aattaaataa aacaactttg taaaaccacc ttagggttcc atatgaatgg
1621 tattgtaaag ttagggggtt gaatttccga tttcaaactt caggattcta gatggacttt
1681 caatgaaagt ttaggggttt atttggactt tttctgcttt aaattgaagc ttatttgtta
1741 gtaacttacc gaagcaagaa ttcggtttcc ggaactcaaa gttccaagct cttacctaga
1801 tgggagacac tatattcctt tgcagttaat catctaacat agtaaccact acaattaatt
1861 aaacagatga taattctcta gtactaaata cttaagtaaa ataaatgttg cacctgtttt
1921 aaaaggaagg ttgcacttca gtaatattga atgaaatagg ctagtgaaat ttacctagta
1981 attatgctga tcatgttttc aagtttcttg catttcgcct tggattttta tttttttttt
2041 gaaaaccaag cctacaatct tatcttgcaa caaatctcaa tcagttactg ttcaattaaa
2101 ccacaacttt tgtcgaccat acagatcttc gtgaagataa acactactta cttgaccatc
2161 ctagcttggt gcctgtgact acagcacagg gagaggaact ccgcaagcac attggcgcaa
2221 cgtgttacat cgaatgcagc tcaaagacac agcagaatgt aaaagctgtg tttgatgctg
2281 ccatcaaggt agtaatcaag cctccaacaa agcagaggga caggaagaag aagaaaacac
2341 ggcgcggatg ttctttcttc tgcaagggtg tcatgtccag aagaaggcta gtatgcttca
2401 agtgaacaag aggggttctt tgatgagcag agcagaggtc tgtgagacaa aatgatgtct
2461 tgtgtttgat aattgcttta tctcaaaagt tccagtttga tagttgcatt tcc
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