LOCUS AK067242 1565 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013095J23, full insert sequence. ACCESSION AK067242 VERSION AK067242.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1565) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1565 /clone="J013095J23" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1565 /db_xref="Osa1:LOC_Os04g53190" /note="(Rice Genome Annotation Project) lysine-specific histone demethylase 1, putative, expressed" /note="mapping to R04-TIGRv4S1-001099R (Chr.4: short arm=31450156, long arm=31452276, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 395 a 336 c 425 g 409 t ORIGIN 1 gcttggactt ccactgtatc gcacaagtgg agatgactct gtgctgtttg atcatgacct 61 tgagagttat gctctctatg acactaaggg ccatcaagtt ccccaagagc tggtagaaaa 121 gatagggaag gtttttgaga ctatattgga agagactggc aaactgaggg aagaaactaa 181 ggaagacatt tctattgcga aggccattgc aattgttatg gagagaaatc cacacttgag 241 gcaagaaggg attgctcatg atgttcttca gtggtatttg tgccgcatgg aaggttggtt 301 tgctactgat gcggacgcaa tctctcttca gggttgggac caggaggtac tgcttcctgg 361 tggccatggt ctcatggttc gtggatatcg tccagtaata aatactctgg caaaaggcct 421 agatatacgc cttggccaca gggttgttga gattgttcgc cacaggaata gggtggaggt 481 tactgtaagc agtggtaaaa catttgttgc ggatgctgca gtcattgctg tccccttagg 541 tgttcttaaa gcaaacacca ttaaatttga acctaggctg ccagagtgga aggaggaagc 601 aataagagaa ctctcagttg gagtcgagaa caaaataatt ctccacttca gcgaggtttt 661 ctggcctaat gtggagttcc ttggagtagt ttcatccacc acatatggct gcagctattt 721 cctcaacctc cacaaggcta ctggccatcc tgttctagtt tacatgcctg cgggtcggct 781 tgcatgtgac attgaaaagc tgtcagatga ggctgctgcc caatttgcct tctctcagct 841 gaagaagatc ctgcccaacg ctgccgagcc gatacattac ctagtgtcac attggggctc 901 agacgagaat acacttggat cctacacctt cgatggggtg ggcaaacctc gtgacctgta 961 tgagaagctg cggatcccag tcgataacct attctttgct ggagaagcca ccagtgtcca 1021 gtacactggc acggtgcatg gcgccttctc cactggtctg atggcagctg aggagtgccg 1081 aatgagggtt cttgagcggt tcagggagct ggacatgctg gagatgtgcc accctgcaat 1141 gggggagcag accgccactg tctcagtccc actgctcatc tcccggctgt gaacagacca 1201 ggagctgcac aaaaattata gtcttctaag gccatttggc acttggcacc cggcgagcgc 1261 actaagccat tcccctgatt gctcgaggaa ggcagcattg gagcaattat cttatttgct 1321 tctccttggc atgaggagtg tgctggtgca gcttgcggtg cgctaaataa agtcactgtg 1381 aaaatggagt gtgggagtct ggtgtgtatt gttgagtata aaatgaggga gtcaatatgt 1441 agttaagcag ggattacgga caatgtgagc catcattact gaacaagatg gtgtatgtgt 1501 gacgaacaat taatttaaac gatcgatatt gaaaatgaat gagtgctttg cccccaagtt 1561 tgacc //