LOCUS AK067172 2788 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013097K17, full insert
sequence.
ACCESSION AK067172
VERSION AK067172.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2788)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2788
/clone="J013097K17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 299..2353
/db_xref="Osa1:LOC_Os07g25450"
/db_xref="RAP-DB:Os07g0435900"
/note="(RAP Annotation release2) SRA-YDG domain
containing protein"
/note="(Rice Genome Annotation Project) histone-lysine
N-methyltransferase, H3 lysine-9, H3 lysine-27,
H4lysine-20 and cytosine specific SUVH2, putative,
expressed"
/note="mapping to R07-TIGRv4S1-000476F (Chr.7: short
arm=14561566, long arm=14568310, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG90301.1"
/translation="MEMDTSPSSSAPSSPAASSDSIDLNFLPFLKREPKSEPASPERG
PLPLPAAAPPPPPPPPPPPPPPQVQAATVATPVPATPDLSAAAVMTPLQSLPPNPEEE
TLLAEYYRLATLYLSSAGAAGVIVPAAAPEASAGAVAQPGSGSGAKKRRPRSSELVRV
SSLSVQDQIYFRDLVRRARITFESLRGILLRDDERAEVLGLTGVPGFGAVDRRRVRAD
LRAAALMGDRDLWLNRDRRIVGPIPGISVGDAFFFRMELCVLGLHGQVQAGIDFVTAG
QSSSGEPIATSIIVSGGYEDDDDRGDVLVYTGHGGRDPNLHKHCVDQKLEGGNLALER
SMAYGIEIRVIRAVKSKRSPVGKVYFYDGLYKVVDYWLDRGKSGFGVYKYKMLRIEGQ
ESMGSVNFRLAEQLKVNALTFRPTGYLGFDISMGREIMPVALYNDVDDDRDPLLFEYL
ARPIFPSSAVQGKFAEGGGGCECTENCSIGCYCAQRNGGEFAYDKLGALLRGKPLVYE
CGPYCRCPPSCPNRVSQKGLRNRLEVFRSRETGWGVRSLDLIKAGTFICEFSGIVLTH
QQSEIMAANGDCLVRPSRFPPRWLDWGDVSDVYPEYVAPNNPAVPDLKFSIDVSRARN
VACYFSHSCSPNVFVQFVLFDHYNAAYPHLMIFAMENIPPLRELSIDYGMIDEWVGKL
TM"
BASE COUNT 510 a 732 c 841 g 705 t
ORIGIN
1 gacttatttt tttacttttc ggtgaagccc gggaaaaagg gcgctccatt tcggagattt
61 cgcacttccc accccttccc ttcgcttcct ccctccctcg cctccgcctc atcgccgatt
121 caaccgattc gccatcgccc cccacctcgc cgccgtcgcc gccgccgcct cgtaaaccgg
181 tgggattttg cggggaggag ggagtttggt gcgggagaag ggggcggagg agtgggtggt
241 tttgtttttt ttttttttgt attttgtttt tgtgtgtgag agagggggga agggggcaat
301 ggagatggac acatcgccat cgtcttcggc gccgtcgtcg ccggcggcgt cgtcggactc
361 catcgacctc aacttcctgc cgttcctcaa gagggagccc aagtcggagc cggcttcacc
421 ggagcgaggg cctctgccgc tgccggcagc ggcaccgccg cctccacctc cgccgccgcc
481 cccaccaccg ccaccgcagg tgcaggcggc gacggtggca actccggtgc cggcgacgcc
541 cgacctctcg gcggcggcgg tgatgacgcc gctgcagtcg ctgccgccga accccgagga
601 ggagacgctc ctggcggagt actaccggct cgcgacgcta tacctgtcgt cggcgggggc
661 ggccggcgta atcgtgccgg cggcggcgcc ggaggcctcc gcgggggcgg tggcgcagcc
721 cgggtcgggg tccggcgcga agaagcggcg gccgcggtcg tcggagctgg tgcgggtgtc
781 ctcgctgagc gtgcaggacc agatctactt ccgggacctg gtgcgccggg cgcgcatcac
841 gttcgagtct ctccgcggga tcctgctgcg ggacgacgag cgcgcggagg tgctcggcct
901 cacgggcgtc cccgggttcg gcgccgtcga ccgccgccgc gtccgcgccg acctgcgtgc
961 cgcggcgctg atgggggacc gagacctgtg gctcaaccgc gaccgccgaa tcgtggggcc
1021 gatcccgggg atctcggttg gggacgcctt cttcttccgc atggagcttt gcgtgctagg
1081 gctacacggc caggtgcagg ctgggatcga ctttgtcacg gctgggcagt cttcctcagg
1141 ggagcccata gccacatcta tcatcgtgtc cggtgggtat gaagacgatg acgatcgcgg
1201 cgatgtactt gtgtacacag gacatggtgg tcgtgacccc aacctccaca agcattgtgt
1261 tgatcagaag cttgagggtg gcaaccttgc cctcgagcgt agcatggcct atggtattga
1321 gatccgcgtg atccgtgctg tcaagtccaa gcgcagcccc gtcggcaagg tatacttcta
1381 tgatggcctc tataaggttg ttgactactg gcttgaccgt gggaagtctg gcttcggtgt
1441 ttacaagtac aaaatgctgc gcatcgaggg gcaggagtcg atgggctctg taaattttcg
1501 actagccgaa cagcttaagg tcaatgccct gactttccgg ccaacagggt atttgggctt
1561 tgatatttcc atgggtcgag agatcatgcc ggttgcactg tacaatgatg ttgatgatga
1621 tcgtgaccca cttttatttg agtatctggc gcggccaata tttccgtcct ctgcagtcca
1681 agggaagttt gctgagggtg gtggcgggtg tgagtgcact gagaattgct caattggatg
1741 ttactgtgca cagaggaatg gcggtgagtt tgcatatgac aagctcggtg ctcttttacg
1801 gggcaaacca ctggtatatg agtgtgggcc atattgccgg tgcccaccta gttgccccaa
1861 cagggttagt cagaaggggc ttaggaatcg gcttgaggta ttccggtcaa gggagactgg
1921 gtggggtgtt cggtctttgg atctcattaa ggctggaacc ttcatctgtg agtttagtgg
1981 gatagtgctc actcatcaac agtcagagat tatggctgcg aatggtgatt gcttggtgcg
2041 gccaagcagg ttccctccaa ggtggttaga ttggggtgat gtctctgatg tctatccaga
2101 gtatgtggca ccaaacaatc cagctgttcc tgacttgaaa ttttcaattg atgtgtcaag
2161 ggcaaggaat gtggcttgtt atttcagcca tagttgcagt ccaaatgtgt ttgtccagtt
2221 tgtgctgttt gaccattaca acgcagctta tcctcacctc atgatctttg ccatggagaa
2281 cattccacca ttgagggagc taagcattga ctatggaatg attgatgaat gggtgggaaa
2341 gttaaccatg tagtcaggct gtctactaga aggcaatact cagtttatct tcctttgttt
2401 tgatgctttc ataatccttc tcatggagat ttttgaggtg attgctgaca acaagtttct
2461 ctgatggcga ataacagaag cttgcatatg ggatgatgtt tcaagccttc ccatgaggaa
2521 ggcaaagtca cagctcattg tcatccacta ggcatcaacc gtccgttgta tatttttgca
2581 tggtagctgc agtgccccgt ggctgattcc ctctcaccct tgaagcttga tgcttgcttt
2641 tgtaggaagc ttgttttgcg cagcaagcac cgagtttcat acttgacctc tgtttttctt
2701 tttttttccc ttcaattgct acgagaactc catatgtaca tatatctgta cattacatga
2761 cttcaaaatg tgtcccactt ctgtctgt
//