LOCUS AK067085 1916 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013096I15, full insert
sequence.
ACCESSION AK067085
VERSION AK067085.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1916)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1916
/clone="J013096I15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1916
/db_xref="Osa1:LOC_Os09g23550"
/db_xref="RAP-DB:Os09g0400300"
/note="(RAP Annotation release2) Similar to Cinnamyl
alcohol dehydrogenase (EC 1.1.1.195)"
/note="(Rice Genome Annotation Project) mannitol
dehydrogenase, putative, expressed"
/note="mapping to R09-TIGRv4S1-000323F (Chr.9: short
arm=13993664, long arm=13995576, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 386 a 531 c 579 g 420 t
ORIGIN
1 ccagactcgc ttgccattct ccagcaccag cagcaagctt cttcttcagc aactcagcag
61 cacttcacct gctgctgctg cgaccgccgt gaccatcacc acctcgtcgc cggcgagaaa
121 cctgcagagg gcgagggcga gtgcggcgga gcaggggatg gaggagcatg gcaaggcggc
181 tgtcggctgg gcggccaggg acgactccgg cgtcctctcc ccgtacaact tctccaggag
241 gtcagtgagc ttctgagctc tgtcactgag aactctcacc gttttgtttg ttctcgtgtg
301 agaattttcg ccatgatttt tggagttgga gaagatgcct tgtctctctg tttctgtgtg
361 gatgagttgt ttcaagattc agatcctata gctaggagaa tggatagatc gagatagttt
421 agctgtcaga tcaatacaag tgtcagtcag ttaaaaatca gcagtcaaac aagtcaagaa
481 ccagagccga ttctttattt tacattatct gaaagtttta atagtctttc acttgatcta
541 tgcacttttt gattaatttg gcagtaaatt atattctata atctggagta gtgttcaatt
601 tgctactgta tgaggctatg aactgtcact tttgcggcta atctgtctag tggataatct
661 tatctgcttc tgctgactaa aaaaaatttc agggctcaga aggacgatga cgtcaccatc
721 aaggtgctct actgcggcat ctgccacact gacctgcaca tcgtcaagaa tgattggggc
781 aacgccatgt accccatcgt ccccggccac gagatcgtcg gcgtcgtcac cggcgtcggc
841 gccggcgtga ccaagttcaa ggccggcgac acggtgggcg tgggctactt cgtcgcgtcg
901 tgccgcggct gcgagtgctg cgggaatggg tacgagaact actgcgccaa gatggtaacc
961 acctgcaacg gcgtcgacca cgaccacggc ggcggcgcgg ccacccaggg cggcttctcc
1021 gacgccatcg tcgtcaacga gcactacgtg ctccgcgtgc cggcggggct gccgctggac
1081 agcgcggcgc cgctgctgtg cgccggcgtg acggtgtaca gcccgatggt gatccacggc
1141 ctgaacgcgc cggggaagca cgtcggcgtc gtcggcctcg gcgggctcgg ccacgtcgcc
1201 gtcaagttcg ccaaggcgtt cgggatgcgc gtcaccgtca tcagcacgtc gccggggaag
1261 cggcaggagg cactggagca cctcggcgcc gacgagttcc tcgtcagccg cgacgcgggc
1321 cagatggcgg cggcggcggc caccatggac gggatcctca acacggtgtc ggcctggcac
1381 ccgatcgcgc cgctgttctc gctgatgaag ccgatggcgc agatggtgtt cgtcggcggg
1441 ccgaccaggc cgctggagct gccggcgtac gccatcgtgc ccggagggaa gggcatcacc
1501 ggcaactgcg tcggcggcat cagggactgc caggccatgc tcgacttcgc cggcgagcac
1561 ggcatcactg ccgaggtgga ggtcatcaag atggactacg tcaacacggc gatggagcgg
1621 ctggagaaga acgatgtccg ctaccgcttc gtcatcgacg ttgccggcag cagcctcgcc
1681 ggctccggcg acgccaagat ataaagctcg ccggcttgct tgcttgcttg tgtcgacggc
1741 gccggcgccg cctagcttgc ttgttgtgtg tcagtggcct tgaatgtttg gtgatgtgca
1801 aactactacg aaatggagta agaaataagt ggagcatatg tctccatcac ttggttatta
1861 attagtcgag ctaattaatt gtacatattg agaaatgatg ataggccaca ttgttt
//