LOCUS AK067007 2373 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013091D15, full insert
sequence.
ACCESSION AK067007
VERSION AK067007.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2373)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2373
/clone="J013091D15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2373
/db_xref="Osa1:LOC_Os02g47470"
/db_xref="RAP-DB:Os02g0703600"
/note="(RAP Annotation release2) Similar to Cytochrome
P450 90C1 (EC 1.14.-.-) (ROTUNDIFOLIA3)"
/note="(Rice Genome Annotation Project) cytochrome P450
90D2, putative, expressed"
/note="mapping to R02-TIGRv4S1-001215F (Chr.2: short
arm=28989848, long arm=28992584, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 498 a 744 c 686 g 445 t
ORIGIN
1 gtccacaccc cccccaacaa caccaccgcc catttccctt tctcttcctc ttcttcttcc
61 ttctcctcct actcctctgc gattgacaaa gataagtgaa gtgagcaggc gccaatgggt
121 gcttttcttc tgttcgtgtg cgtgctcgcg cctttcttgc ttgtctgcgc cgtccgcggc
181 cgccgccggc aggcgggctc gtcggaagcg gcggcgtgcg gcctgccgct gccgccgggg
241 tcgatggggt ggccgtacgt cggggagacg ttccagctgt actcgtccaa gaaccccaac
301 gtgttcttca acaagaagcg gaacaagtac ggtcccatct tcaagacgca catcctggga
361 tgcccctgcg tgatggtgtc cagcccggag gcggcgcggt tcgtgctggt gacgcaggcg
421 cacctcttca agcccacctt cccggcgagc aaggagcgga tgctgggtcc ccaggccatc
481 ttcttccagc agggcgacta ccacgcccac ctccgccgca tcgtctcccg cgccttctcc
541 cccgagtcca tccgcgcctc cgtcccggcc atcgaggcca tcgcgctccg ctccctccac
601 tcctgggacg gccagttcgt caacaccttc caagagatga agacttacgc gctgaatgtg
661 gcattgctgt ccatcttcgg ggaggaggag atgcgctaca tcgaggagct gaagcagtgc
721 tacctgacgc tggagaaggg gtacaactcg atgccggtga acctgccggg caccctgttc
781 cacaaggcca tgaaggcccg gaagaggctg ggcgccattg tggcccacat catctctgcc
841 cggcgcgagc ggcagcgggg gaacgacctg ctagggtcgt tcgtggacgg ccgcgaggcc
901 ctcaccgacg cctagatcgc cgacaacgtc atcggcgtca tcttcgccgc ccgcgacacc
961 accgccagcg tcctcacctg gatggtcaag ttcctcggcg accaccccgc cgtcctcaag
1021 gccgtcaccg aagagcagct gcagattgcc aaggagaaag aggcgtcggg cgagccgctg
1081 tcatgggcgg acacgcggcg gatgaagatg acgagccggg tcatccagga gacgatgagg
1141 gtggcgtcca tcctctcctt caccttcagg gaggccgtgg aggacgtgga ataccaaggg
1201 tacctgatcc ccaagggctg gaaagtgcta cctctgttcc gcaacatcca ccacaacccc
1261 gaccacttcc cctgcccgga aaagttcgac ccgtcccggt tcgaggtcag catcacgaac
1321 ccactcttcc gtgtttttgt tcccttccct ccctttcctt tcccggtgcg gccgacttcc
1381 tagccaagtc ggtccgcggt ttgcgagcag tggccggtat gggttttcct gaccccgcgt
1441 ccgtcccgtc actgttgcag gtggcgccca agcccaacac gttcatgccg ttcgggaacg
1501 ggacccactc gtgcccgggc aacgagctcg ccaagctgga gatgctcgtg ctcttccacc
1561 acctcgcaac caagtacagg tggtccacgt ccaagtccga gagcggcgtc cagttcggcc
1621 ccttcgcgct gccgctcaac ggcctcccca tgagcttcac ccgcaagaac accgagcagg
1681 agtgaaaacc gaacagggag acaaaaagaa gaagaagaat actagcatca gctaagctgg
1741 ggaaagctgg caaaaccaac atcaacggcg ggcagcggcg ccacgcagcg cgcgcgagtc
1801 cattttcgcg gcggtcaccg tccgggggga cacctgttgg cgccgcagtg ggagcgggag
1861 accgaacggt ggattccgta ttagcacgga tcatcagagt ccttgtacag attcttcagc
1921 taggaccacg gttggcaatc gagaggagga gcagaggagt tgatgaaaaa aaaccaaaca
1981 ctacgtagac atctgagcta gggagcgcca caaagaagtg gcccttaatt gtaaaaccaa
2041 ccatttttta tccttttttg cttagttttt tttttggcca acaactatag gagaagagta
2101 gagaagagaa gagaaattgg ggagaaaata cagggaggat gaagaggccc tgattgggat
2161 gtaagctagg ttgcccgcct gaaagcaggc tggcatgcag atgcagctat aggtcgaata
2221 atcgaggcga gcgatgatgg acggatggat cgattcatcg atcgccagag tcaaaaggga
2281 agaacgtcgt gatcccccgc gggctaagcc aggccacggg agagcgactc ctctgtaccg
2341 tttcgtccaa ctcaagagaa aatgaccttc ttg
//