LOCUS AK066943 2099 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013089N23, full insert
sequence.
ACCESSION AK066943
VERSION AK066943.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2099)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2099
/clone="J013089N23"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2099
/db_xref="Osa1:LOC_Os12g02640"
/db_xref="RAP-DB:Os12g0119000"
/note="(RAP Annotation release2) Cytochrome P450 family
protein"
/note="(Rice Genome Annotation Project) cytochrome P450
72A1, putative, expressed"
/note="mapping to R12-TIGRv4S1-000057F (Chr.12: short
arm=911503, long arm=915364, direction=forward) for TIGR
Pseudomol ver4"
BASE COUNT 560 a 475 c 480 g 584 t
ORIGIN
1 gtgattcttc ctaatcagtc agtttcctca tcctctttgc atcctccgcg ccctcgcgct
61 gatacttgta atcaatcaac tcatcagcat ggtcttcgca tggagctgct agctgcagag
121 tcacagagcc caattgttga gctcgaaatg ccacgtgttg tatgatcgtt acatgctaac
181 tgctcagagt gagtgaggcg cttctttgcg gctttatgtc cttttcagct ccaagcttca
241 catggagatg gatcacccag caaatatgca gtatacagta tatggatatg ctatgaacat
301 gtagtctccc tcttctctca cacacacacc cagatacgta cacacaaaaa tggagctatt
361 ctcatcacag caatggctag cacttctacc tccgatcatc ctctgtatcc ttctgttctc
421 ctatgtgtat atcattctat ggctaagacc agagcggttg aggcagaaac tgaggagcca
481 aggagtgagg ggtcccaagc cttcttttct ctttgggaac atagcagaga tgaggagaat
541 ccagcaattg gccaagtcag cacatgaaca agaagcaggg agtaccgaca tgttttcatc
601 aaattatgtg gcaactcttt tcccttactt cctccactgg agcagggttt atggttccat
661 ctacctgtat tccactggaa gcatacaagt tttaaatgtt actgatccaa acatggtgaa
721 ggagctagcc aactgcaaat ctttggatct tggaaaacct tgctacttgc aaaaagagcg
781 tggagctctt cttggtatgg gaattctgac atcaaatggt gatctatggg tacaccagag
841 aaaagtgatt gcacctgaac tattcatgga aagggttaag ggaatggtga atttgatgat
901 ggaggctgca atgtcaatgt tgaactcatg gaaaaatgaa gttgaggaca gaggaggcag
961 tgcagagatt gtggttgatg agttcttgag aaccttttca gctgatgtca tatcaagggc
1021 ttgttttgga agcagcttta gtgaaggcaa ggagattttc ataaaaatac gacaacttca
1081 gaaagcaatg gcaaaacaaa gtatgctcat tggtgttcct ggaagtaggt atttaccaac
1141 aaggagcaat agagggatct ggaatctgga tagtagcatc cgtaccctca ttttaaacat
1201 atcaaagaaa tatgaacatg attcatcgac ctcagtaaac aaggatctcc tgcactccat
1261 tattcaaggt tctaaggatg gtccctttgc ttcatgcacg cccgaggatt tcatcgtcga
1321 caactgcaaa aacatctact tcgcagggca tgagacaact tcgaccacgg ctgcttggtg
1381 tttgatgctt ctagcttcac accatgaatg gcagtcccgt gcccgggtgg aatcccttga
1441 catttgtcaa gggagaccac tagattttga cattctacgg aagttgaaaa agctgacaat
1501 ggtgatccag gagacactcc gattgtaccc accagcctcc ttcgtcgccc gggaagctct
1561 gaatgacatg aaacttggcg gcatcgacat accgaaagga actaacatct ggatcccgat
1621 cgcgatggct caccgggatc cttcagtatg gggtcctagt gccgacaaat tcgatccgga
1681 caggttcgcc aacggcatag caggggcctg caaaccccct catatgtaca tgcccttcgg
1741 cgttggggtc cggacatgtg ccggccagaa tctagccatg gttgagctca aggttgttct
1801 gtcactcctg ctgtccaagt ttgaattcaa gctttctcca aactatgtgc attgccctgc
1861 gttcagactg accatcgagc ctgggaaagg tgttccatta atttttagag agctctgact
1921 tgagattctt gaaggttata taaatgtttc ccttttcccc ttgttatatt tgtttggtat
1981 gtgtttgcaa caatgctgca actcgagtgt aaacagtagt atattctaca gtatgcaatt
2041 ctgtacaccg attgaagtgt tacttatttg tggaatgaaa cttttacttc tcgtctgtc
//