LOCUS AK066635 3495 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013071A07, full insert
sequence.
ACCESSION AK066635
VERSION AK066635.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3495)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3495
/clone="J013071A07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 160..3204
/db_xref="Osa1:LOC_Os01g11054"
/db_xref="RAP-DB:Os01g0208700"
/note="(RAP Annotation release2) Similar to
Phosphoenolpyruvate carboxylase (Fragment)"
/note="(Rice Genome Annotation Project)
phosphoenolpyruvate carboxylase 1, putative, expressed"
/note="mapping to R01-TIGRv4S1-000313F (Chr.1: short
arm=5896362, long arm=5906362, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG90059.1"
/translation="MISLHSAPFTLLVKLPGRRRSGLTPPRCAVRGAGNVSSAAVREM
AVAEGRRQHEYSIDARLRQLAPEKVSADDRLVDYETLLVARFLDILEDLHGGDFRQVV
EDCLRLSGEYQSEGDPARLGELGGLLTSLDVGDAIMVASSFSHMLNLANLAEEIQMVY
RKKAEASRRGDFVDEASAPTESDIDETFQRLVRGLGKSPREVFDALRSQTIDLVLTAH
PTQSVRRSLLQKHASIRSCLTQLCGEGISDNEEQEIDEALQREILAAFKTDEIRRTPP
TPQDEMRAGMSYFHDTIWNGVPKFLRRVDTALKNIGIDERLPYNAPLIQFSSWMGGDR
DGNPRVTPEVTRDVCLLARMMAANMYFSKMADLMFELSMWRCNDELRARANELHRKSS
RKYAKYYIEFWKKISPGEPYRIILGDVRDKLYNTCERARQILSKGISSIPEDQTYTNV
EQFLEPLELCYRSLCDCGDKLIADGRLLDLMRQVSTFGLSLVKLDIRQESERHTDAMD
AITTHLGIGSYREWPEERRQEWLVSELRGRRPLFGPDLPQSEEVADVLGAFRVIAELP
ADSFGAYIISMATAPSDVLAVELLQRECGVKKPLRVVPLFEKLADLQQARATMELLFS
VDWYKERIDGKQEIMIGYSDSGKDAGRLSAAWQLYKAQEEIVGVAERHGVKLTIFHGR
GGTVGRGGGPSHLAILSQPPNTVNGSLRVTVQGEVIEKSFGEENLCFRTLQRFTAATL
EHGMNPPVSPKPEWRRLLDDMATVATDEYRSIVFQEPRFVEYFRAATPETEYGRMNIG
SRPSKRKPGGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFRHAMQQSDAGGGLATLR
EMYDEWPFFRVTIDLLEMVFAKGDPGIAALYDELLVPDDLRPFGEQLRANYVETQRLL
LQVAGHKDLLESDPYLRQRLMLRDSYITALNVCQAYTLKRIRDGGFRPETRPPLSKEL
LGSSAVAEKLVKLNPNSEYDPGLEDTLILTMKGIAAGMQNTG"
BASE COUNT 642 a 1147 c 1099 g 607 t
ORIGIN
1 gagcagccgg tgacaccaca aaatcctctc gcgctctcgc tcgcgtctcc tccccctccc
61 ccactccaac gctttaaaaa aaccggggga aatggcgtgc ccgcgcctac gcctcgccgt
121 gcagccgcgc gcgcggtata aattcgcacg cgagccgcga tgatctccct ccactccgcc
181 cccttcaccc tcctcgtaaa gctccccggc cggaggagga gcggtcttac gccgccgagg
241 tgcgccgtcc ggggagccgg gaacgtgtcg tcggcggcgg tgcgggagat ggcggtcgcg
301 gaggggcggc ggcagcatga gtactccatc gacgcacgcc tccggcagct cgcgccggag
361 aaggtgtccg ccgacgaccg cctcgtcgac tacgagaccc tcctcgtcgc gcgcttcctc
421 gacatcctcg aggacctcca cggcggcgac ttcagacaag tggtggagga ttgcctgagg
481 ctgtccgggg agtaccagag cgagggcgac ccggcgaggc tgggcgagct gggcggcctc
541 ctgacgagcc tggacgtggg cgacgccatc atggtggcga gctccttctc ccacatgctc
601 aacctggcca acctcgccga ggagatccag atggtgtacc gcaagaaggc ggaggcgagc
661 cggcgcgggg acttcgtcga cgaggcctcc gcgcccaccg agtccgacat cgacgagacg
721 ttccagcgcc tcgtccgcgg ccttggcaag tccccccgcg aggtgttcga tgcgctccgc
781 agccagacca tcgacctcgt cctcaccgcc caccccacgc agtccgtcag gcgttcactc
841 ctccagaagc acgcaagcat taggagctgc ctgacacagc tctgcggcga gggcatctcc
901 gacaacgagg agcaggagat cgacgaggcc cttcagagag agattctcgc ggcgttcaag
961 acggacgaga tccggcggac gccgccgacg ccgcaggacg agatgcgcgc cgggatgagc
1021 tacttccacg acaccatctg gaacggcgtg cccaagttcc tccggcgcgt cgacacagcg
1081 ctcaagaaca tcggcatcga cgagcgcctc ccctacaacg cccccctcat ccagttctcc
1141 tcatggatgg gcggcgatcg cgacgggaat ccgagggtta caccagaggt taccagggac
1201 gtgtgcctgc ttgccaggat gatggctgcc aacatgtact tctccaagat ggccgatttg
1261 atgttcgagc tctccatgtg gcgctgcaac gacgagctcc gagctcgtgc caacgagttg
1321 caccggaagt cctcaaggaa gtacgccaaa tactacattg agttttggaa gaagatttct
1381 ccaggagaac cttaccgcat tatactcggc gatgtgaggg acaagctgta caacacctgc
1441 gagcgtgctc gccagatctt gtcgaaggga atttctagca ttcctgaaga ccagacttac
1501 accaatgtcg agcagttctt ggagccgctt gagctgtgct accgatcgct gtgcgactgc
1561 ggcgacaagc tgatcgccga cggcagactg ctcgacttaa tgcggcaggt ctccaccttc
1621 ggcctctccc tcgtcaagct cgacatccgg caggagtcgg agcgccacac cgacgccatg
1681 gacgcgatca ccacgcacct cggcatcggc tcctaccggg agtggcccga ggagcggcgc
1741 caggagtggc tcgtctccga gctccgcggc aggcgcccgc tcttcggccc cgacctgccg
1801 cagtccgagg aggtcgccga cgtgctcggc gcgttccggg tcatcgccga gctccccgcc
1861 gacagcttcg gcgcgtacat tatctccatg gccaccgcgc cgtccgacgt gctcgccgtc
1921 gagctgctgc agcgggagtg cggcgtcaag aagcccctga gggtcgtccc gctgttcgag
1981 aagctcgccg accttcagca ggcgcgcgcc accatggagc tcctcttctc cgtcgactgg
2041 tacaaggagc ggatcgacgg gaagcaggag atcatgatcg ggtactccga ctccggcaag
2101 gacgccggcc ggctgtccgc ggcgtggcag ctgtacaagg cccaggagga gatcgtcggc
2161 gtggcggagc ggcacggcgt gaagctgacc atcttccacg gccggggcgg caccgtgggg
2221 cgcggcggcg ggccgagcca cctcgccatc ctgtcccagc cgccgaacac cgtcaatggc
2281 tcgctccgcg tgactgtcca gggcgaggtc atcgagaagt cgttcggcga ggagaacctc
2341 tgcttccgga cgctgcagag gttcacggcg gcgaccctgg agcacggcat gaacccgccg
2401 gtgtccccga agcccgagtg gcgccgcctg ctcgacgaca tggcgacggt ggccactgac
2461 gagtaccgct ccatcgtgtt ccaggagccg cgcttcgtgg agtacttccg cgccgccacg
2521 ccggagacgg agtacgggcg gatgaacatc ggcagccggc cgtcgaagcg gaagcccggc
2581 ggcggcatcg agtcgctgcg cgccatcccg tggatcttcg cgtggacgca gacgcggttc
2641 cacctccccg tgtggctggg cttcggcgcc gcgttcaggc acgccatgca gcagagcgac
2701 gccggcggcg gcctcgccac gctccgcgag atgtacgacg agtggccctt cttccgcgtc
2761 accatcgacc tcctcgagat ggtcttcgcc aagggcgacc ccggcatcgc cgcactctac
2821 gacgagctcc tcgtccccga cgacctacgt ccattcggcg agcagctcag agccaactac
2881 gtcgagacac agcgcctgct cctgcaagtt gctgggcaca aggatctcct ggagagtgat
2941 ccgtacctga ggcagcggct gatgctgcgg gactcgtaca tcacggcgct gaacgtgtgc
3001 caggcgtaca cgctgaagcg gatccgggac ggcgggttca ggccggagac gcggccgccg
3061 ctgtcgaagg agcttctggg ctcgtcggcg gtggcggaga agctggtgaa gctcaaccca
3121 aacagcgagt acgaccccgg gctggaggac acgctcatcc tcaccatgaa gggcatcgcc
3181 gccggcatgc agaacacggg ctgatcgatg caaaagcacc atggccttgc cggttaaaac
3241 tttgtagaga agattggtgg gagtggattg agactgtaaa ttggtgttgc tgacttgttt
3301 ctggtgctta ttgggtcaag aacagatcgt actgttcttg tttcttcagt tatctctgtt
3361 ttttagcagt gatggtacac ggatttcctg gttctagctt gaaccgtgat cactgttttc
3421 tttcagtaac gtagcagatt aacctggagt ggggatatac ctgagaattc agcttcccaa
3481 gcatatcttt ttttg
//