LOCUS AK066627 3167 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013072C11, full insert
sequence.
ACCESSION AK066627
VERSION AK066627.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3167)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3167
/clone="J013072C11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3167
/db_xref="Osa1:LOC_Os06g28590"
/db_xref="RAP-DB:Os06g0480000"
/note="(RAP Annotation release2) U box domain containing
protein"
/note="(Rice Genome Annotation Project) ubiquitin-protein
ligase, putative, expressed"
/note="mapping to R06-TIGRv4S1-000634R (Chr.6: short
arm=16263257, long arm=16269838, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 885 a 639 c 701 g 942 t
ORIGIN
1 gaccattaac tccccactca ctctcacgtc tcaccggcgc aggaaggaga agtcctcgtg
61 tttcgtcctc tctccctcct cgatcctacc ccttgccggc gtcttgcttc tcctcctccc
121 acttgagcgg cagccgtcgc cgtgatgtag caggcagtcc cgccgaatcg atcccgcggt
181 agctagctag ctgcaggctg cagcagctaa gtccaacaat tttagggggg aagaacccaa
241 tcttgtgaac gaaagaacta gtctgggtca gccaagaatc cagccaagat tatttctatc
301 tgtcccgcgg gggcagttta aggtttcttc atctgctcca gaaactcagg acagaagcag
361 tttactgatt ataatcactt ttgctctctg ggacaagaaa ggaagagggg caaatccaaa
421 agagtttgat acttttatca cggattactg ttagtcgatg gagaataata atgatggagt
481 gattggaata tcctggcgta attctaatcc aaaggttcac agctcaatgt gcagtgaatt
541 gacaatgatg ttagataaag tctcttctat tcttccctca atcgaaactg ctcaaccagg
601 atgtaaagcg ggtatagagg aactatgcaa cctgtacaac atagttgaca aaggaaaact
661 cataatccag aactgcattg agtgcagtag tctttacttg gctattacag gggaggcaac
721 tgcaatgcgg tgcgaaagga taagagatgc gctgaggcga agcttgttcc tggttcagaa
781 tatggtcccg tcatcattag ctaatcaggt ggctgatgtt catgatgatc ttggggatgt
841 gaaattcatt gttgacccag aagaagatga ggctggcaaa gccattttgg agatgcttcg
901 gcagtctgat gcaacccaag aacatgaact ccagactttc ttgtttgcag cgtcaaagtt
961 aaatttgacg tcaccaaagg ctatcttaat tgaaagacga gcaatcaaga aactactgga
1021 caagatcaat ggtaatgatc ccaaaaagga aggaatactc aaattttttc aatatctagt
1081 taggaaatat ggaaagacta tgaagcctga gggtagtgca aagaatgaag gtgtggatgt
1141 tgcaaacgtt acttcgagta caaacctaat tgctagtggt accgatgctc cacagaaatg
1201 cttttcacct acaaactctt ggactggaag atgtgaagag cagaataatt tgtcacgatt
1261 ttctactcct ccagagttct gctgcccact atctatgaag ctgatgtacg atcctgtgat
1321 aatagcatct ggacaaacct atgagagaga gaacattgag aaatggttca gtgagggata
1381 tgatatttgt cctaggacac agttaaagtt agaaaatttc acgattactc caaatacttg
1441 tatgaaggct gtgatctgca actggtgcaa agataatgag cttgaattca cttctttacc
1501 tgaacaattt catagttact ctgtttcaag tctacacaat atctcagcac ctctagttgc
1561 tggaacaaag agagattaca tgtctgatca tagcagttca tctgttgcat tatctggttc
1621 tagttatgta tcatctccaa tgcgggaaac agaagagtca aggactaatt ctactcagtt
1681 tttttcaaac gcttattacc agttgtattt gtccttcagc agcttcaaca aggagatgtt
1741 tctgaatttc ttttacgagc tgtccgagct tccaatggaa cttcaagtga aggctgtcag
1801 agatttcaaa agtgttctga atcgtgaata tcaaatttgg cgttctatga tttccaatgg
1861 ttttttagaa gcatttcttg agtttcttaa gaacgataat ggaaaatgca caatggaagc
1921 tcaaagaact ggcattcagt tttttcttgc ttttctacgt aatagcagga cccgaattcc
1981 atccattagt gaagatgcag tgcgtctcgt tgcttcattt cttgattcag agttaaaaac
2041 tgaagcattg gagatactcc atgaactgct gcatcaacca agttgtcgga aatctcgtct
2101 catggcatct gttgttgctc catctgtgtt tctagcttgg gatagtgcag actccctgtg
2161 cctagaacta gttttgaaga tcatctgcga gctttcattc aaaaatgatg tacaatcttt
2221 cctaatttct tctggaataa tctcaaagct atctccaatt ctcagtcaag ggaaatcgcc
2281 tgagtgttgc ctaaagattc tactaaattt aagtgaaggg aaacaagctg cggatctcat
2341 tatcagaact gatcaatgcc tcagttctat ttcagattat ctggacacag gaagctccgt
2401 ggaacgcgag catgcgtcag gtatccttct tgccttatgc tctcgcagca tcgacgattg
2461 tgttcttgtc atgaaggaag gtgtcatccc tgcgctggtc gatttgtcgg tcaatggaac
2521 tgaggttgca aaggcttctt caatcaagtt gcttcaactt ctcagggact ctagacaaag
2581 cgaccagttt ggcaattcat gttcaagtga ggtggctgtc aatggtgcag cagagaattc
2641 gcccattggc acgatctgca aacaaccaat atcaaaatca gctcggtata tctcaagaaa
2701 gctcagcatt ttctcgaaac ctcgatcgct gaccctcgtc tgatgagtcg agtttgattt
2761 tggttggagc tttgtacatt ttcaaacact gcccaaccag ctggtgtaca gtttgtagca
2821 gatagtagtg tccagatgaa atgcttgatg ggatgttttt tcaaccccat gtactagtgt
2881 ttcttctaga gtttgtattt gcagtacttt tgcttttctt tactaggttg ttttagataa
2941 agacatacgg tgaacaggtt ttatgtcgaa agttgcattt tattctctgc tgttgcatat
3001 acagttgaaa atctgaaggg gcaggcagca catgtcagtc tgaaggatgc aacacctttg
3061 ataatatggc gtctttgtta tgtgtgtgtg tgcgtgtgtg tatttaaaag gatgaatagt
3121 cgaagtttaa atatgaatag tattcggtta ccgtatactt tatttcc
//