LOCUS AK066579 1816 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013071I03, full insert
sequence.
ACCESSION AK066579
VERSION AK066579.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1816)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1816
/clone="J013071I03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 246..1457
/db_xref="Osa1:LOC_Os05g50550"
/note="(Rice Genome Annotation Project) prenyl
transferase, putative, expressed"
/note="mapping to R05-TIGRv4S1-001136F (Chr.5: short
arm=28901380, long arm=28904740, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG90037.1"
/translation="MLSVSCPRVYMSRKALDFGQLASCRCRWAGRSGMRVAPRRRMPC
VCFVASPSQPGLAAVDVPAEAISSARTTTMIPERISVSSLLEVVSDDLLKLNNNLKSL
VGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAEIIEMI
HTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKL
ISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTI
CEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKL
REIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQFRSTLE
NVVKYNLQRID"
BASE COUNT 488 a 373 c 442 g 513 t
ORIGIN
1 gtgagccgcc acttccttcc ttccaaaaag gaagagggga aaaaaaatct atagccacca
61 aattgagcaa gattctcaca cgaaaccaat cacaagctag cattcgttta atttcttggc
121 tgctattgtc cggggaagag gttcttggtg tccaaagaat ttgtcggttc tagggagctc
181 caagttgctg tagcttcatt tcttggttct ttgggttctt ggattggcgg tactgattgt
241 gggagatgtt gtctgtgagc tgcccgagag tgtacatgag caggaaggcg ctggatttcg
301 gtcagctggc ctcctgccgg tgccgttggg ctggccggtc cggcatgcgg gtggcgccga
361 ggcggcgcat gccatgtgtt tgtttcgtgg cctcaccgag ccagccaggc cttgctgcag
421 ttgatgtgcc agcagaggcg atttctagtg cgagaacaac aacaatgatc cctgagcgaa
481 tttctgtttc ttcacttttg gaggttgtct ccgacgacct gctgaaactc aacaataatc
541 tgaaatcgct tgttggtgca gaaaatccag ttttagtttc tgcggcagaa caaattttcg
601 gtgctggtgg aaaaaggtta agaccagcat tagtttttct ggtgtccaga gcaactgctg
661 aattagctgg tttgttggag cttactacag agcatcaacg cctggcagag atcatagaga
721 tgattcacac agcaagttta atacatgatg atgtcataga tgatagtggc atgaggagag
781 ggaaagaaac tattcatcag ctatatggaa cacgggtggc cgtacttgct ggtgatttta
841 tgtttgcaca atcttcttgg ttcctagcga acttagaaaa catcgaagtt attaagctca
901 tcagccaggt gatcaaggac tttgccagtg gtgagataaa acaagcatct actctttttg
961 actgcgacgt cacccttgat gattacttgc tcaagagcta ttataaaacc gcttcgttgc
1021 tcgcctcaag cacaagatct gctgcaatat tcagtggtgt aagcaccact atatgcgaac
1081 aaatgtatga atacggcagg aatctcgggc tctcgttcca ggtagtagat gatattcttg
1141 actttaccca atcagctgag caacttggga aaccagcagg gagtgactta gcaaagggaa
1201 acctgacagc tccagtcata ttcgctttgc aagatgaacc caaactaagg gagataatcg
1261 attctgagtt cagtgaaagt gattcattgg ctactgcaat cgacttggtt cacagaagtg
1321 gtggaataag aagggcgcag gagcttgcaa aggagaaagg tgacttggct ctccaaaatt
1381 tgcagtgcct tcccaagagc cagttcagaa gtacccttga gaacgtggtg aaatataatc
1441 ttcagaggat tgactgatgg attcacttga ttcctctgaa tcacttgatt tctctgaata
1501 taagatgctc gcacccatgt gggttagtag ctcccaaaga agttcatctt gctagaataa
1561 tgtcgatctt gggaagatga ttacaagcag caactttttg ttgtggatcc accaccaaca
1621 tgtatcatag catcctattt tgcagtttat gtaactacaa ggcagataaa ggaactaagg
1681 aagcatagtg tatatttcat agtagtttcg gcttcttgat acacgaaata gtattttttt
1741 cccctcccct ttctgccatt tcatttgtca ttggagaacg actatgaatt aattaacatg
1801 attatacttt atagcc
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