LOCUS       AK066561                2396 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J013073D14, full insert
            sequence.
ACCESSION   AK066561
VERSION     AK066561.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2396)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..2396
                     /clone="J013073D14"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             1178..1981
                     /db_xref="Osa1:LOC_Os01g42700"
                     /db_xref="RAP-DB:Os01g0612600"
                     /note="(RAP Annotation release2) Protein of unknown
                     function DUF1644 family protein"
                     /note="(Rice Genome Annotation Project) expressed protein"
                     /note="mapping to R01-TIGRv4S1-000971R (Chr.1: short
                     arm=24609758, long arm=24612154, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG90030.1"
                     /translation="MDHPHNAVLLVCSSHEKGCRPFMCDTSYRHSNCFDQYRKASKES
                     SKDSGASAAAAPECSECQQPIKLSCPLCRGPVSHWTKDYDARKYLNVKVRACTKESCE
                     FRGAYGQLRRHARENHPTVRPTQVDPERQRDWHRMEQQRDLGDLFSMLRSGLSAREDG
                     IGVSEGEEDISERALHSPSITMVFIVRTGRSILHYREAFPGHHRRRTILLLGEAFGRE
                     SSPLGGASGSGDGDTTARENDEGDDDVTLSTEASAGSQHDGEVDGDPAH"
BASE COUNT          552 a          560 c          656 g          628 t
ORIGIN      
        1 gctctctctc gagtctcccg tctcctttcc cctccttcct cctccccttt cgtcttagcc
       61 tcagctcgcc gcgagacgaa tcctcccctc gccgccgccg ggtccgatcg acggcggtat
      121 cgagggacgg agggggcgcg cccgttctct cgccgtacac cgtcgtcgcc gaccggctcc
      181 ctcgacggca cggtaaaata aaaaataaaa agcctcctcc tcctcctcct cccctatgat
      241 ggcggatgcg gcggcggggg ggcgggccga tctggacgcc gttgacccgc ccgattcggc
      301 tcggtcgcat ccccccgtgc gcgcgtttac tgggaggatc tgttgtattt ggacgtttta
      361 gactggatcg agtgaggggg attttgcggt gttcttgctg tgacgggatt cagctatgta
      421 ggtgtaggaa tcttatgtta acttgttggg tggctctgct gcttctgatt ctttctgtga
      481 atctggagta acaaattctt tctgtgaatc tggagtaaca aggacttgtg ctatggccga
      541 tctctacttt tagtacttcg ttatgttcta tacggcatag gagtccatct ctcgatagat
      601 aagagttctc tgattttgga tggggatttg cttgatggat ccggagtcat ataacatgtt
      661 tgcaaaaaaa gaaaaaggag gagtccatct ctcgatagat aagagttctc tgattttgga
      721 tggggatttg cttgatggat ccggagtcat ataacatgtt tgcaaaaaaa gaaaaaggaa
      781 aaatgattta gtttgtgttc tgtcatgtat aacccttgtt tctacaaaga tgtactagtt
      841 tgcgatctga ttaagcatct catgctttct cgctttgatt ctctttcaga gtttgaagtt
      901 ggaaatcaac cttgttgttc tctgtagcgc tttcctttgg attgcggaga atttcaaaca
      961 aaaccaacaa acctttgcat ctgactgact tgaggtaact atgccaaagg acaggagcac
     1021 ccgtgccatg tcatacgagc gccgccggtc tcgtgtttcg ccgtacccct ccaatgggaa
     1081 gggctgtgct cgcaggtcag aggagtctgc tgctgctgcc gctgccgctg ccgcgaagca
     1141 ggctgcggaa tgggaggatg tccgctgccc ggtctgcatg gatcacccac acaacgctgt
     1201 tctgctcgtc tgctcgtcgc atgagaaggg ctgccgccct ttcatgtgcg acacaagcta
     1261 ccgacactcc aattgctttg atcagtaccg caaggcctct aaggagtcct caaaggattc
     1321 tggtgccagt gctgctgctg cgccagaatg cagcgagtgc cagcagccca taaaactgtc
     1381 ttgcccgttg tgtcgtgggc cagtcagcca ttggacaaag gattatgatg cacggaagta
     1441 cttgaacgtg aaggttcgag catgtactaa agagtcctgc gagttcaggg gggcatacgg
     1501 tcaactgagg agacacgcca gggagaacca tcctactgtt agaccaactc aggtggatcc
     1561 tgaacggcag cgagactggc acagaatgga gcagcagcgt gatcttgggg acttgttcag
     1621 catgcttcgt tcaggcttaa gtgccaggga ggacgggatc ggagtcagtg aaggggaaga
     1681 ggatatcagc gagagggctc tacatagccc atctataaca atggtcttca ttgtgcgcac
     1741 tggcaggtcg atactccact acagggaagc attcccaggc caccacagaa gaagaacaat
     1801 tcttctgctt ggggaggctt ttggtcgtga atcctcccca ttagggggag caagtggcag
     1861 tggtgatggt gacaccacag ctcgcgaaaa tgatgaaggt gatgacgacg tcacgctatc
     1921 aacagaggca tcggctggtt ctcagcatga tggtgaagtc gatggtgatc ctgcacattg
     1981 atgcagctgg tagggagtgc caaggcgtgc acctggactg aaaagctcta caagcaagca
     2041 atctttcggg ttcaccaggc atccaagacc acatgttggg aagaaacatg ggggtgttcc
     2101 atttggcttt aggcgtagtc aggacatcct gcctacgtgc aagaagaact gagatgaaat
     2161 tgcaatgcag ggataggctc aaaaccgctg tggagttgtc ttagtttcat ttttaatata
     2221 tttgctggaa ggtctgtagc aacagaaaca tcaatggtgg tggtgtattt atcatgtcca
     2281 cggctaggac ttgggtgaat tcaattcact gcgttgtaat ttgatctctg aaatatattc
     2341 tttctgcgtt gatgaatctg atcatgttaa agcagaaatt tgatgtatat ttatgt
//