LOCUS AK066561 2396 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013073D14, full insert sequence. ACCESSION AK066561 VERSION AK066561.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2396) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2396 /clone="J013073D14" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 1178..1981 /db_xref="Osa1:LOC_Os01g42700" /db_xref="RAP-DB:Os01g0612600" /note="(RAP Annotation release2) Protein of unknown function DUF1644 family protein" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R01-TIGRv4S1-000971R (Chr.1: short arm=24609758, long arm=24612154, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG90030.1" /translation="MDHPHNAVLLVCSSHEKGCRPFMCDTSYRHSNCFDQYRKASKES SKDSGASAAAAPECSECQQPIKLSCPLCRGPVSHWTKDYDARKYLNVKVRACTKESCE FRGAYGQLRRHARENHPTVRPTQVDPERQRDWHRMEQQRDLGDLFSMLRSGLSAREDG IGVSEGEEDISERALHSPSITMVFIVRTGRSILHYREAFPGHHRRRTILLLGEAFGRE SSPLGGASGSGDGDTTARENDEGDDDVTLSTEASAGSQHDGEVDGDPAH" BASE COUNT 552 a 560 c 656 g 628 t ORIGIN 1 gctctctctc gagtctcccg tctcctttcc cctccttcct cctccccttt cgtcttagcc 61 tcagctcgcc gcgagacgaa tcctcccctc gccgccgccg ggtccgatcg acggcggtat 121 cgagggacgg agggggcgcg cccgttctct cgccgtacac cgtcgtcgcc gaccggctcc 181 ctcgacggca cggtaaaata aaaaataaaa agcctcctcc tcctcctcct cccctatgat 241 ggcggatgcg gcggcggggg ggcgggccga tctggacgcc gttgacccgc ccgattcggc 301 tcggtcgcat ccccccgtgc gcgcgtttac tgggaggatc tgttgtattt ggacgtttta 361 gactggatcg agtgaggggg attttgcggt gttcttgctg tgacgggatt cagctatgta 421 ggtgtaggaa tcttatgtta acttgttggg tggctctgct gcttctgatt ctttctgtga 481 atctggagta acaaattctt tctgtgaatc tggagtaaca aggacttgtg ctatggccga 541 tctctacttt tagtacttcg ttatgttcta tacggcatag gagtccatct ctcgatagat 601 aagagttctc tgattttgga tggggatttg cttgatggat ccggagtcat ataacatgtt 661 tgcaaaaaaa gaaaaaggag gagtccatct ctcgatagat aagagttctc tgattttgga 721 tggggatttg cttgatggat ccggagtcat ataacatgtt tgcaaaaaaa gaaaaaggaa 781 aaatgattta gtttgtgttc tgtcatgtat aacccttgtt tctacaaaga tgtactagtt 841 tgcgatctga ttaagcatct catgctttct cgctttgatt ctctttcaga gtttgaagtt 901 ggaaatcaac cttgttgttc tctgtagcgc tttcctttgg attgcggaga atttcaaaca 961 aaaccaacaa acctttgcat ctgactgact tgaggtaact atgccaaagg acaggagcac 1021 ccgtgccatg tcatacgagc gccgccggtc tcgtgtttcg ccgtacccct ccaatgggaa 1081 gggctgtgct cgcaggtcag aggagtctgc tgctgctgcc gctgccgctg ccgcgaagca 1141 ggctgcggaa tgggaggatg tccgctgccc ggtctgcatg gatcacccac acaacgctgt 1201 tctgctcgtc tgctcgtcgc atgagaaggg ctgccgccct ttcatgtgcg acacaagcta 1261 ccgacactcc aattgctttg atcagtaccg caaggcctct aaggagtcct caaaggattc 1321 tggtgccagt gctgctgctg cgccagaatg cagcgagtgc cagcagccca taaaactgtc 1381 ttgcccgttg tgtcgtgggc cagtcagcca ttggacaaag gattatgatg cacggaagta 1441 cttgaacgtg aaggttcgag catgtactaa agagtcctgc gagttcaggg gggcatacgg 1501 tcaactgagg agacacgcca gggagaacca tcctactgtt agaccaactc aggtggatcc 1561 tgaacggcag cgagactggc acagaatgga gcagcagcgt gatcttgggg acttgttcag 1621 catgcttcgt tcaggcttaa gtgccaggga ggacgggatc ggagtcagtg aaggggaaga 1681 ggatatcagc gagagggctc tacatagccc atctataaca atggtcttca ttgtgcgcac 1741 tggcaggtcg atactccact acagggaagc attcccaggc caccacagaa gaagaacaat 1801 tcttctgctt ggggaggctt ttggtcgtga atcctcccca ttagggggag caagtggcag 1861 tggtgatggt gacaccacag ctcgcgaaaa tgatgaaggt gatgacgacg tcacgctatc 1921 aacagaggca tcggctggtt ctcagcatga tggtgaagtc gatggtgatc ctgcacattg 1981 atgcagctgg tagggagtgc caaggcgtgc acctggactg aaaagctcta caagcaagca 2041 atctttcggg ttcaccaggc atccaagacc acatgttggg aagaaacatg ggggtgttcc 2101 atttggcttt aggcgtagtc aggacatcct gcctacgtgc aagaagaact gagatgaaat 2161 tgcaatgcag ggataggctc aaaaccgctg tggagttgtc ttagtttcat ttttaatata 2221 tttgctggaa ggtctgtagc aacagaaaca tcaatggtgg tggtgtattt atcatgtcca 2281 cggctaggac ttgggtgaat tcaattcact gcgttgtaat ttgatctctg aaatatattc 2341 tttctgcgtt gatgaatctg atcatgttaa agcagaaatt tgatgtatat ttatgt //