LOCUS AK066446 2645 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013060C10, full insert
sequence.
ACCESSION AK066446
VERSION AK066446.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2645)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2645
/clone="J013060C10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2645
/db_xref="Osa1:LOC_Os02g51070"
/db_xref="RAP-DB:Os02g0744700"
/note="(RAP Annotation release2) Similar to Starch
synthase isoform zSTSII-2 (EC 2.4.1.21)"
/note="(Rice Genome Annotation Project) soluble starch
synthase 2-2, chloroplast precursor, putative, expressed"
/note="mapping to R02-TIGRv4S1-001364R (Chr.2: short
arm=31227422, long arm=31232340, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 526 a 689 c 851 g 579 t
ORIGIN
1 gaatctcttt tctctcgtcg tcgtctcgtc ttcccacctc tcggattccc gagctccaca
61 cgacacgacc cacctcggcc actctccgcc gtcggtggcc agtggcctcc accccctccg
121 tcccccgggg accacaccgg cgtaacatca gccacacctc cggcagatct ttcccccgcc
181 gcttaattca cctcctcttc gccgcggcgc aggcggagca gggtgagcgg ggtttggtgg
241 cacttgtatg gtggcacggg gctgcggttg cattgggagc ggcggggttt ggttcgggac
301 ggagccgtcg tgtgctcggc gtcggccgcc ggtggtgagg atggcgtcgc gaaggcgaag
361 acgaagtcag cggggagctc gaaggcggtc gctgtgcagg gcagcacggc caaggctgat
421 catgttgagg attcagtttc atcacccaaa tacgtgaaac ctgccgttgc gaagcaaaat
481 ggagaggttg tgagcagagc taccaaatct gatgcaccag tgtctaaacc caaagttgac
541 ccgtcagttc ctgcttccaa ggctgaagct gatggtaatg cacaagctgt ggaatcgaag
601 gctgcactgg acaagaagga agacgtcggt gttgctgaac cgttggaagc taaggctgat
661 gctggtggag atgcaggtgc agtaagctct gcagatgata gtgagaacaa ggaatctggt
721 ccattggcag ggccaaatgt gatgaatgtc attgtggtgg cttctgaatg ttctcctttc
781 tgtaaaacag gtggtcttgg agatgttgtg ggtgctttgc ctaaggctct ggcaagaaga
841 ggacatcgtg ttatggttgt gataccaaga tacggagaat atgcagaagc caaggatcta
901 ggtgtccgca aacgttacag ggtagctgga caggattcag aagtgagtta ttttcatgct
961 tttatcgatg gtgttgattt tgtgtttcta gaggcccctc cctttcgaca ccggcacaat
1021 gatatttatg gaggagaaag atttgatgtt ttgaagcgta tgattttgtt ctgcaaagct
1081 gctgttgagg ttccttggtt tgctccatgt ggtggttcca tctacggtga tggcaattta
1141 gtcttcattg caaatgattg gcatactgca cttttacccg tatatttgaa ggcatattac
1201 cgagataatg gcttgatgca gtatactcgc tctgttcttg tgatacacaa cattgctcat
1261 cagggtcgtg gccctgtaga tgacttcgcc acgatggact tgcccgagca ctacatcgat
1321 catttcagac tgtacgaccc cgtcggcggt gagcacagca acgtgttcgc cgctggcctg
1381 aagatggctg accgcgcggt caccgtcagc catggctatc tgtgggagat caagacaatg
1441 gacggtggct ggggcctcca cgagataata aaccacaacg actggaagct gcagggcatc
1501 gtgaacggca tcgacatggc cgaatggaac cccgaggtgg acgagcacct gcagtccgac
1561 ggctacgcca actacacgtt cgagacgctg gacaccggca agaaacagtg caaggaggcg
1621 ctgcagcggc agctgggcct gcaggtccgc gacgacgtgc cgctgatcgg gttcatcggg
1681 cggctcgacc accagaaggg cgtggacatc atcggcgacg cgatgccgtg gatcgccggg
1741 caggacgtgc aggtggtgat gggggcacgg ggcggccgga cctggaggag atgctgcggc
1801 ggttcgagtc ggagcacaac gacaaggtgc gcgggtgggt ggggttctcg gtgcagctgg
1861 cgcaccggat cacggcgggc gccgacgtcc tcctgatgcc gtcgcggttc gagccgtgcg
1921 ggctgaacca gctgtacgcc atggcgtacg gcaccgtgcc cgtggtgcac gccgtgggcg
1981 ggctccgcga cacggtggcg ccgttcgacc cgttcgccga cacggggctc gggtggacgt
2041 tcgaccgcgc cgaggcgaac cggatgatcg acgcgctcgg gcactgcctc aacacgtacc
2101 ggaactacaa ggagagctgg agggggctcc aggcgcgcgg catggcgcag gacctcagct
2161 gggaccacgc cgccgagctc tacgaggacg tcctcgtcaa ggccaagtac cagtggtgag
2221 ctggtggtat ttttcgcgac gcctctggat cccgccgtgg atgggcgcgc tttttctcta
2281 gggcggctct gcgtcggaga cgctcagacg catcgcgcgc gttcgcgccc acacgatgac
2341 tggcacgctg ctgctgagac ggcggcacgc gatgccatca tgccaccgga cggtaggagc
2401 aacggtggaa gtgaactgta ctactggtgc tacactgcta ctacatgaga tctgctctta
2461 ttggtcacgt actcacgttc acgctgaatt accgaatgtg ttgtgtcttg tgtgtgtgtg
2521 ttaaaggcat tgtcctggta aatggtggag acgagatggc cgggtcgcgg gagttatatt
2581 tgtatatgtt gccagctttc tgagtttttc aagccagtgc ggctcttcag tgcaggttcc
2641 aagcg
//