LOCUS AK066414 3105 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013067I11, full insert
sequence.
ACCESSION AK066414
VERSION AK066414.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3105)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3105
/clone="J013067I11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3105
/db_xref="Osa1:LOC_Os04g49410"
/note="(Rice Genome Annotation Project) alpha-expansin 13
precursor, putative, expressed"
/note="mapping to R04-TIGRv4S1-000921F (Chr.4: short
arm=29266052, long arm=29269430, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 796 a 716 c 681 g 912 t
ORIGIN
1 gactatagcc aaagcaattc acactcgcac gggctcgaga cggcagcaca gctccactcc
61 actccactct cccccaccac accacactgc actgaggcat accgacgaac acctttggag
121 ccatggctcc ctgcctcctc ctcgtcctct tcctcctccc ggcgctcgcc accggccacc
181 agcacccgtc caccctcggc tcctccgccc tctccgagtg gcgctccgcc aaggcctcct
241 actacgccgc cgacccggaa gacgccatcg gtggcgcgtg cgggttcggg gatctgggga
301 agcacgggta cgggatggcg acggtggggc tgagcacggc gctgttcgag cgcggcgcgg
361 cgtgcggcgg ctgctacgag gtgaagtgcg tggatgacct caagtactgc ctccccggaa
421 cctccatcgt cgtcacggcc accaacttct gcgccccgaa cttcggtctc cccgccgacg
481 ccggcggcgt ctgcaacccg cccaaccacc atttcctcct ccccatccag tccttcgaga
541 agattgcgct ctggaaggcc ggcgtgatgc ccatccagta ccgccggtac gttcgattct
601 tggctgcatc ctttgattgc tgctatcttt agtctacttt gcactggatt ctagactaga
661 tctgaggttt atgtttccca ttttcttaat ccactttgtg tggaaatgtg aaagtgctta
721 gaattgcgtc ggttggtaga atgtgggatc ccagaaaagc tgaattataa gtggccgttg
781 tggaggaaag gaaatgggcc gtcttccaat acggtcaact tctgttagag cacccgcaat
841 ggtaaagtaa ggtgctctct ataaaacatg tacatctcag caatagacta gattaatagt
901 aaaccacctc aatagtatgt ctacatgggt atctatagct ctctaatgca ttgcctcgtt
961 tttctctata gactatctcc aggttagtag atagctttgc tctctctctt catttaatct
1021 cttcaatgta ggaaaatatg ctgacataga tatcttgtag agagcctata gataaccatt
1081 gcgggtgccc ttagggttca gttggatagt ttcatggtcc tttatgctgt agtgtgttta
1141 ggtgtctagg ttaggagaaa aaagggcagt acttttaaag ccttcagcca tttgatgcac
1201 cattttcgta agtactgtta gagttctaac tgtttcagtt gatttgcttc tggctcagca
1261 gcacaagaaa ctggtttcca aaaaaaaaaa gcagcacaag aaacttggtg tatgcttcag
1321 ttaaaaattc atatagtttg gaataatatt ttgctggttg gaattaaaac gatgcaactt
1381 acatgcacca ttgatcagaa aactagcagt aacttactat tgtcatctaa atgtcgctcg
1441 tgagaattca tttattccat tactctacta gtttaaggtt gctagctaga atccggaggc
1501 tgtgagctat ggacctgcag gtaacagcaa ctcacaccga atttatgcaa acagccttcc
1561 tcatatctga gttagtttac gaggttttcc caggctaatc ctaataatca agactcaaaa
1621 gtacacagtt ctgggtaatt tccagcagtt tttttaatct gtatcggtag gcactaagga
1681 atgttagtct gctccattac atagaccgtt ttccatcacg cttaattcct ttctggggta
1741 cattagatgt tcctttaagc tctcaatgac cactaagtta gtcccacagg ttgaattgct
1801 gcattatttg tggactgtag ctgtccttaa tttgctttct gtactagcaa tttataccgg
1861 ttggtatgtc tttcaagtcc ttcaataatt tgatctgtta tcaaaactaa aatagtgtta
1921 aacagatcag ttcatagtca ggcattatct tttcctgcac tagatttttc ttcacatctt
1981 agtgctctag atctaaatag gttacaatct tccagttgac gtctgtaaat tagtgtacgt
2041 catttctagt aatattcaag aattaatttt acgaaccccc taatgtgatg ctgaattagg
2101 ttgcctgtat tactttctca aatattctga ggtatagttg agtaatgcaa tatccattat
2161 gtgcgtttaa gttggcatca aatgtgcgtc taagttggca tcaattagat gttcaacttc
2221 aagatggttt cctgaatatc atactgtcat atttatgtgc ctatcatact tcctcaagat
2281 cgatgttcca ggacattttg tagagaacat caacctgcag cgcttttaaa ttatttcagg
2341 cttcaccata tgttacaggg ctcagttgtt ggcaggattt ccatgagagt gacaatctgt
2401 ttgaacggat tgtttcactg agcagtgaac catcacaagg acagctgtac aaggctatca
2461 gtaacatgat agcctgtaga tagaaagcaa aattattgta gattgtaaat tggtcagcaa
2521 aaattgtcaa ttgtcactaa tcttggcgtg tttaatttgt atgcagcgtc aactgtcttc
2581 gtgatggtgg tgtgcgattc gcagtcgctg gtcgaagctt cttcctgaca gtcctaatta
2641 gcaatgtcgg tggtgctggc gatgtccgat cagtgaagat caaaggaacg gagtccggtt
2701 ggctctcgat gggccgcaac tgggggcaga tatggcacat caactctgat ttcaggggac
2761 agcctctctc cttcgagctc acctcaagtg atggaaaaac attgaccaac tacaacgtgg
2821 tccctaagga gtgggacttc ggcaaaacat acactggcaa gcagttcctg ctctagagag
2881 gaaagggtac caatagcagc ttacagttac aaattttttt ctgatcctat gagttggatt
2941 gtactattgt atattcctct gaggaacgat aatagtatca ttagagaaag aaatgtttag
3001 tgcagagcct ccaatagtag tccaacatag aaaaggtgct cataaatgtg gcatgtacca
3061 tttggaactc tgataattgc actacagagg cttgatgtac cattc
//