LOCUS AK066321 3163 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013060L04, full insert
sequence.
ACCESSION AK066321
VERSION AK066321.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3163)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3163
/clone="J013060L04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3163
/db_xref="Osa1:LOC_Os05g50980"
/db_xref="RAP-DB:Os05g0587200"
/note="(RAP Annotation release2) Conserved hypothetical
protein"
/note="(Rice Genome Annotation Project) SET domain
containing protein, expressed"
/note="mapping to R05-TIGRv4S1-001160F (Chr.5: short
arm=29168316, long arm=29172576, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 840 a 712 c 657 g 954 t
ORIGIN
1 gtgataacgt attcttccat cgcaggaggt gcgcttccta tccccatcgc cacccatggc
61 gactcccgcc gcttcccctc tcctgctgcc gctccccctc cccctcccgg cctccacctt
121 cccgcctcgc cgcgccgttc cctgcgcccg ccgcctcgtc ttgcggcctc cccgcgccgg
181 acgccctcgc ctccgggacc cgcctcccgc ggcaccccca ccggcggcgg aggaggtcgg
241 cgaggaggaa gaggacgacg atgccccccc gctcaggctc ctcgaaccgc cccaggagga
301 cgaccccttc ccgcccgaga tggagccggc cgaccccgac ttctaccgga tagggtacgc
361 gcggatgatg cgggcgtacg gggttgagtt cttggaaggc cccgatggga tggccgtcta
421 tgcctcccgg gacgtcgacc cactccgcag agctagagtg attatggaga ttccattgga
481 gctaatgctg actataactc aaaaacgccc ttggatgttt ttccccgaca ttattccact
541 aggccatccc atatttgaca tcattgaatc aacagatcct gaggtaaatg gagccctcta
601 accctctaat tatggtatgt tccagtgaag actgtatgtg cattccagag tttgtgtttt
661 ttagtttcta cagaatcact tatgaggaac attgtgtaat taagattcaa tagcgctttg
721 actgcccatt ccatctacta tgaaaataag ctgttatatt ggataaaagg gatggtatta
781 ctcaacactt gcaacctgtt ttcttccttc atgcggtgtc aaagcttcat aagtgatgta
841 gactgcatcc taacgcaatc tgtaccctct tgcagacaga ttgggatcta aggttagctt
901 gccttcttct ctatgcattt gatgtagaag acaacttttg gcagctatat ggtgattttt
961 tgcctagtgt tgatgaatgc actagcttgc ttttggcacc aaaggtattg taaatctaaa
1021 caaaatgaat tgtagtcttc ttaaacctga caatacagtt tgaatgaatt tacatgcctg
1081 gcttgccagg acgatctaat ggaactagaa gaccaagatc ttgccacgaa aatgttaaag
1141 aaccagaaga gagcaattga tttttggcaa aaacattggg tacacttctg tactatttga
1201 tcaacttcgc tggcttgggt acatctaaca ctagcttgat gggtaatgtc cagcataaaa
1261 caatccctct aaagctaaag cgtcttgccc ctgaccatga aagatttcta tgggcactga
1321 gtattgttca gtctcgctct gtcaatttga aactgagaat gggagccttc ctccaagatg
1381 caaatgtcct agtgccgtat gctggtacat gttttcttat ctgttcccct ttatgctctt
1441 tatttttatt ttcagtgtgt attaagcacc gattactaaa attaagaata aaatcactta
1501 gtttcttcag cttgcgatga taatcagatg tctaacagtc taagtcaagg ctgcggtctg
1561 agggatcttt tgctccattt attttgagct ggcgaatgct ataaaggttt ttataatgtt
1621 atagcgctaa tgttacttgc acagtaaatc atagttacca actgatccaa gatattatat
1681 tttctaatat cagcactact tctgtatggt taaactctgt tggaataagg atctaactaa
1741 tatctattgt catttttcac accaatacta cgctttattc cttctagacg ttctagtcag
1801 gcagtatagt tacattgaat tacttaataa ttatcacaaa ggcatgaaat tcaaaactat
1861 actgttctga taatcagcat attctagctt ctgattactg atactgagtc tcatcataac
1921 ttatagcttg cctatttgtc tccagatatg ctgaatcatt cacctgatgc taattgtttc
1981 ctgcattggc gtttcaaaga tcgtatggtt gaagtcatga ttaaggctgg gcatgctgtc
2041 aaaaaaggag atgagatgac aattgattat atgagtggag tgaacagctc atttatggaa
2101 agatatggtt tctcatcacc aacggtatga tcatgtgttt gattttaatt cttgcttgtt
2161 cttgcaagcc acatctgtcc tttcccactt ggcaggactt agcattgagg aatattgtgt
2221 tgggtataag tataactata tctgcgagat tatggttctg cttaaaggaa acaactctag
2281 catcaaatat gttgtgctgc tatgctagat tgctaggcat gttaatacga taccatgcat
2341 tgaaacaact acagtgtcat tttttttttt aaaaaaaatg tgacttctta tatggttgtg
2401 tgcacacaac aaacactaca gaatccttgg gagcttataa acttctcgag tgatgccaag
2461 attcatcttg actccttcct gtcggtcttc aacattgctg gcttgcatga tgagctctac
2521 cacaatgctg cattgacctc aggagaaaac aactttgttg atggaggagt cgtggcagca
2581 gcaagaactc tgccgacatg gtcagaaggt gatgttcctg ccataccaag cttggaaaga
2641 aaatctgctc aggcattaca agaggaatgc catacgatgc tggagtcctt ttcaaccact
2701 attcaacaag accaggagat tctagattct gatggacata tcagaagaac acgtgaaatc
2761 gcaatcaaat atcggctaca ccggaagctg ctcctgcaga aaatcatcga tgcattggat
2821 atctaccagg ataaaatttt gttttagata gctgtatagg caacaactag ttgagctcca
2881 gtgctagttt gctaagcgct ggagtgtctt tagatgattt tgtgaagggg gtttcactca
2941 catctgtaac agtagggatt tcacctcatt cttttagata tttccacttt ggtagatagc
3001 agtatagtga aataaagaca gtgcccatga ggtagtgtag tttccagcca gtgacctgca
3061 gaaaatcaag taatccctct gtttcgaact acttgtgttc tagttttgtc ctaaggtaaa
3121 cattttaata tttgactatc aatttctata aactcatata gtc
//