LOCUS AK066300 2670 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013060A09, full insert
sequence.
ACCESSION AK066300
VERSION AK066300.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2670)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2670
/clone="J013060A09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2670
/db_xref="Osa1:LOC_Os01g56510"
/db_xref="RAP-DB:Os01g0771900"
/note="(RAP Annotation release2) Similar to
Exo-beta-glucanase"
/note="(Rice Genome Annotation Project) periplasmic
beta-glucosidase precursor, putative, expressed"
/note="mapping to R01-TIGRv4S1-001408R (Chr.1: short
arm=32907564, long arm=32912992, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 715 a 565 c 646 g 744 t
ORIGIN
1 gggtgcgcgt taaccaccgg acaccacagc gagcagagcg ccgctgttct cttccgcttc
61 tctccctgag ctcggcctcg tgtcactgac gtcgtgtatg agaggaaggt ggtgagctca
121 gcagctcagg ctcagctcgc agtagggagc agacgccggc cgcatcgccc cccttcgcgt
181 ttcgctgctc cgaggtgaaa cggcaatgca tgattggtgc tgtgtcagcc tcagtccttg
241 attatttcca cagagaaaac gcataatgcg ccttgtttct aggaagacct atcaggttaa
301 gaattcggga gaaatatttg gaaattctca ggcatgatat gtcccaaaat ttctttggca
361 tgcgttcttc tgctcctatg gtttacctca acgggagatg cagcatacat gaagtacctg
421 gatccaaagc aacccaccaa cactagaatc aaggacctta tcagtaggat gactcttgca
481 gaaaaaattg gccaaatgac acagattgaa cgtggggttg catctgcaga tgtcatgaaa
541 aactacttca taggtagtgt attgagtggt ggtggaagtg tccctgctcc ccaggctact
601 cctgcagttt gggtgaacat ggtaaatgaa ttccagaaag gcgccttgtc aacacgtcta
661 ggaataccta tgatctacgg cattgatgca gttcatggta ataacaatgt ctacaatgcc
721 accctatttc ctcacaacat tgggcttgga gctacaaggg atcctgacct cgtaaggagg
781 atcggcgaag caactgctct tgaagtacgg gcaacaggca ttccgtacac ctttgctcca
841 tgtattgcag tttgtcgaga tccacgatgg ggccgatgtt atgagagcta cagtgaagac
901 cacagggtag tccagcagat gacagacatt atacttggtc tacaaggaga tatcccaata
961 aatcatacca agggagttcc ttatattgct gggaaggata aagttgctgc ttgtgctaag
1021 cactttgttg gtgatggtgg aactcataat ggaatcaatg agaacaacac gatcactgat
1081 gaacatgggc ttctaggcat tcacatgccc ccatattatg actctattat aaagggtgtt
1141 gctactgtta tggtttccta ttcaagcttg aatggtgtca aaatgcatgc caatcatgat
1201 ctggttactg gctacctgaa atccaaattg cattttagag gatttgtgat atcagattgg
1261 ctaggaatag acaggataac gtcaccacct gatgcaaatt atacttactc tgtgcaagct
1321 ggaataaatg ctggtattga tatggtcatg gtgccattca attacaccca atacattgat
1381 gatgtgacac ctcttgttaa gaagggtatt atcaatatga gcagaattga tgatgctgtc
1441 aggcgtatcc ttcgagtcaa atttataatg ggcctattcg agaacccttt agctgatctt
1501 agcttcgcag atcagcttgg aaagaaggag cacagagatt tggctagaga agccgtcagg
1561 aaatcacttg ttctattaaa aaacggcaac tctcccaatc aacaattcct gcctctacca
1621 aagaaagcta gaagtatcct tgtagctgga agccatgcta gcaatttggg ctaccaatgt
1681 ggcgggtggt caattgaatg gatcggaggt agtggagata ttactgtagg tacaacaatt
1741 cttgaggcca taaagtccac tgtcgctgat tcaacacatg ttgtctactc tgagaaccct
1801 gatgaaagct tcatgaaaaa caatgacttc tcattcgcta ttgttgttgt tggtgagcga
1861 acatatgctg aaacaacagg tgatgaccca gaactcacca tcctagaccc tggtacagac
1921 acaatccgaa cagtgtgttc cacagctaag tgtgcagtgg ttatcatctc tggtcggcct
1981 gttgtcattg aaccatatct tccaatgatg gaagcgctcg tcgcagcttg gcttcctgga
2041 acagaaggtc agggtgttgc ggatgtactg tttggggact atggcttcac cgggaagctc
2101 ccacgcactt ggttcaagtc tgttgaccag ctgcccatga atgttggtga cctacactat
2161 gatccactct tcccttttgg ttttggtttg acaataaatt catcgcagcc agggttctct
2221 ggtgctgaca gactgagaga taggaatggg gggatgatat acgttgtgtt gagtttggta
2281 ctgtcagtaa tactgatgca tgcttcgggc ataggtatat tttaactcga gttgcccttt
2341 cctagtcgta gtatggttcc acatcaagtg ctccatgcct tcatcgttat acgttgtatg
2401 tactagcgct atggagattt tttgattgca aagatgcatt tatccctaaa gctaggtggg
2461 tcagtgggtg ataagcagat ttgttctttc acggttttac caaattatgt gtggttataa
2521 tagagcattt ttatctaggg aggacaaagt agatggatta tgctctgcaa atactgatgg
2581 gcctacagca cttctttact ctccgtacca tgtgacactc cacagaaagt aaaggaatat
2641 taaaatgtgg gtaagaaatt gatgggtttg
//