LOCUS AK066297 2712 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013059A21, full insert
sequence.
ACCESSION AK066297
VERSION AK066297.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2712)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2712
/clone="J013059A21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2712
/db_xref="Osa1:LOC_Os04g45990"
/db_xref="RAP-DB:Os04g0544100"
/note="(RAP Annotation release2) Similar to SET
domain-containing protein SET104"
/note="(Rice Genome Annotation Project) histone-lysine
N-methyltransferase, H3 lysine-9 specific SUVH6,
putative, expressed"
/note="mapping to R04-TIGRv4S1-000851R (Chr.4: short
arm=27024994, long arm=27027704, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 693 a 587 c 779 g 653 t
ORIGIN
1 gaggagaacc cccaccccac ccacctcgcc ccactccgcc gcgccccctc cccgctgcct
61 ccgtggagcg tcatctccac gtgcagggtt agaggcttct ggtggtggtg ggggcagtgc
121 ggggggcgtt ggatggggat cccggaggtg gtggtgccgc cgagggcggc cggcccgcgg
181 aggtacaagg ggctcgtgcc gtggcgcttc cagccgggct tcgtcaggcc gcctccggtc
241 aagccccctg ccgccgccgc cgccgttgcc ggaggagggg tcgcgggcac gcccggcggc
301 aagggtcgcg ggttgggggc gtcgggggaa ggcgtcgggt ccagtggagg ccggggagat
361 cctcaatcga ggagatgcac ccacagcgcg agcgcgaagg gctctggtga tgcgcggagc
421 gtggaggagg gcggtccccg tgttgccgga gacgacggcg gttcgggcaa atccggcgtc
481 gcggcggagg gctccggatt tgagggtttg aggaatggca ggggcggtgg cgttggaacg
541 gcagctgccg aagattgtgg tttggagaag tccaaccccg atggcatcgt cggagatgct
601 gatgtgcatc ttgagagcgg cagcgatgca agagatgggg aatgcgtttc tgagggtttg
661 aagaagcctt gtgtaaataa tagcaatggt tcttctgccg cggattgcgc gccgaaggtg
721 aaaaagggaa atgacagtgg caatggaggt gccgatgagt gtaatgctgc agccaaaagt
781 agcaacttag catgtcctgg caacaatggc gacgaaacga atcgtaaggg gcggaaggta
841 gtacttccat ggaggttcca ggttgggttc aagcggtcgt tctcgaaagc tttctgctcc
901 gatagtgaat cttcagggcc ctctggtact caattctaca gagcccaaga ctcttcgaca
961 ccgtgcactc cagcaacaag aagttctgtc cggtgttatg cgagtgctca ttctggtgtt
1021 agagtctcgg ccatgcgtga tttctcagtg aaaggtgaga aggaaacatc aactccatat
1081 aagaagagca aaactggcat ggatggtcct agtcaaggga tgccaaagaa tggagttgtc
1141 ctcgctaggg aaaacattat gggatctctg cagaattttc gcttaattta cagggacctt
1201 ttggatgaag aagaagagaa gtcgacagaa gcagtgatta gacctgatct acaagcttac
1261 agaattttca gggagcggtt catcacagac tgcgatgaga agaaatatat tggcaatgtg
1321 cctggaatca aagttggtga tatcttccac ttgagggtag agctttgtgt tgttggtctt
1381 catcgcccac accgggtggg tgtagatcat atcaaacagg aggatgggac ttgcatagct
1441 gttagcattg tatcatatgc acaatcttcc gatattaaga ataatttgga tgtcttggtg
1501 tattctggag caatgacagc tatagccaat cagaagatag agggtaccaa cttagcactc
1561 aagaagagta tggacactaa cacaccagtc cgtgttatcc atggtttcgt cactcacctc
1621 aatggaaact gccagcgaaa gaagatccct acttatatat atgggggttt atatatagtc
1681 gagaaatact ggagggagaa agagggtaat gatcgttatg tttatatgtt ccgactgaga
1741 agaatggcag gtcagaaaca cattgacatc caagacattc tgaattcagg acaagctgaa
1801 tcatatggtg gtattatcat aaaagatata tcccgaggat tggagaagat ccctgtatct
1861 gttgttaatt caatatctga tgagtaccca atgccctatc gctacattgc acacctgcag
1921 tacccccgta actaccagcc agcacctcca gcaggctgtg gttgtgttgg tggatgctca
1981 gattctaaaa ggtgtgcatg tgcagtgaaa aatggtgggg agattccttt caatgataaa
2041 ggccgcatct tagaagcaaa acctcttgtt tatgagtgtg gaccttcatg caagtgccct
2101 cctacatgtc ataacagagt tggtcaacat ggccttaggt ttcgtttgca agtcttcaaa
2161 accaaattga tgggctgggg agtaagaact cttgacttca taccatctgg aagctttgta
2221 tgtgaataca ttggagaagt gttggaggat gaagaggcac agaaaaggtc gaccgatgaa
2281 tacttattcg ctattggtca taattattat gatgaagccc tttgggaggg cctatcaaga
2341 tccataccct cacttcagaa gggtcctgat aaagatgagg aagctggctt tgctgttgat
2401 gcttcaaaga tgggcaactt tgcaaaattc atcaaccata gttgcacccc taacctttat
2461 gcacaaaatg tcctatatga tcatgacgac aagagtgtac ctcacattat gttctttgcc
2521 tgtgaggaca ttccaccccg ccaagaactt tcataccact acaactatac aatagatcag
2581 gttcatgatg ccaatggtaa catcaagaag aaaaaatgtc tctgtggctc tatagagtgt
2641 gatggttggt tgtattaggc ttgagagtgt actatttcca gaggcataat tgaacttctt
2701 tcattgggca tg
//