LOCUS AK066232 2141 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013057M05, full insert
sequence.
ACCESSION AK066232
VERSION AK066232.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2141)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2141
/clone="J013057M05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2141
/db_xref="Osa1:LOC_Os06g30970"
/db_xref="RAP-DB:Os06g0506600"
/note="(RAP Annotation release2) Similar to
Ubiquitin-conjugating enzyme E2-17 kDa 8 (EC 6.3.2.19)
(Ubiquitin- protein ligase 8) (Ubiquitin carrier protein
8) (UBCAT4A)"
/note="(Rice Genome Annotation Project)
ubiquitin-conjugating enzyme E2-17 kDa, putative,
expressed"
/note="mapping to R06-TIGRv4S1-000684R (Chr.6: short
arm=18014558, long arm=18016698, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 552 a 446 c 461 g 682 t
ORIGIN
1 gctccccacc tcgcgttccc tcccctctcc cctccggcca tggcgtccaa gcggatcctc
61 aaggagctca aggacctgca gaaggatccc ccaacctcct gcagcgctgg taggtatcct
121 cctcttcttc ttcttcgctg tcccccaatt ccagggttca cgggcgattt tgtttcttgt
181 cgattcatcg acttcttagc gtgccggctg ctggatagtg gaatcctctg ttgactcttt
241 agctttcgaa aaaattttga accaagggaa ggggaggagg gggaggtcat actgtgcagt
301 gctgcaattt tgtgtttgtt tatggttttg ctaccaattt cgtgcatatt attatcccct
361 gagcgggtgt ggagctgcgt tttgttataa ttctggagct gttaattgtt cttctttcgc
421 aaatttaacg cttattacgg ctggctggat agaaggatag agagctcaag cagagacgct
481 ggatagaggg atatacggtt ttagaggtta ttgttcgttc aacctgctta gttaggagta
541 taccttcgtt gttttagtaa tttgtggaag catggggtag catatctagg acatggataa
601 gtctcgttgg caatgatacc aggccacaat cgttgtttac aactcaacaa tttgtgtaac
661 tggaactaat tcttgtgtac cgatgaaata ataataccct caatatgtgt gtgatgataa
721 ttgttcttgt ctacatgcta gtgtacccca aacaagacat gtggatgttg tagaattgtt
781 ttgatatttc taactgaatg tgacaacttg tgtggcgaat attggtttca tgatatgttc
841 tgttcaaatg cattgcaaca attgagattg gattggagta cctttgtatg actaacacgc
901 gaaatacgcc taacaggccc tgtgggagaa gatatgttcc actggcaagc tacgattatg
961 ggtccagcag atagtccata tgcaggtggc gtcttcttgg tttctattca cttccctcca
1021 gactatccgt tcaaaccgcc caaggtatac attccttcca cttctttttg tgttgttcag
1081 gaaactgttt gtttttagga cttgtggaag tttattataa gagcatcact tgcttcaatt
1141 ttatataatc ttaaggccct tgagtaactg attacaagat atttgctgtt agggctctgc
1201 tctaagcatt catagctagg gataaaatgt cctgttaatt tcagtctcaa agtggagttc
1261 taactgatcc tttacaaagc ataatatacc tgtaaatgtt agttttgtaa aggtcctgat
1321 tcactttggc aaatgtgcgt taccaattca acaaactatg aaaatgcttg tttcttccac
1381 caccataaaa aaaaatgctt cacttgagtt caacggtcac tgtagctttg ttctgataac
1441 aatcattttt caggttgcat ttaagacaaa ggttttccac ccaaacatca acagtaacgg
1501 aagcatctgc cttgatatcc tgaaggaaca gtggagccct gcattgacag tgtcaaaggt
1561 gaattgatcc tctccctctc caactaagtc aagaaaccct ttgagacagc ttgtgcatgt
1621 gcaaaagctt agcttctttg aagttgtcac atagaaacta cttacttgag aagttaggca
1681 ctttggcacc atagaaatgt taggaagttg gagctctcat agtctctagg gcttaacaaa
1741 tgcccaacac cgtatatcac ctgcgtgcta atctggttgg agtaactttt gttttccagt
1801 tgcacgaatt atctaacgtt tgacacaatt ttcaggtact cctctcaatt tgttctctac
1861 tgacggaccc aaacccagac gacccgctag ttccggagat tgcgcacatg tacaagactg
1921 atcgggccaa atatgaatca actgcgaggg gctggaccca gaaatatgca atgggctgaa
1981 cgacgtaggc cgatagtgtt ctctagcgat atatgttatc ttgttgatct agtgttcatg
2041 tcctgctaca tgcctacatg gggtgtaatt tcttctgtca ctgaatttat gtcaaattct
2101 cgattgatgg tagaagttat tgagaaaaat ttcaattacc t
//