LOCUS AK066231 2244 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013059M09, full insert
sequence.
ACCESSION AK066231
VERSION AK066231.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2244)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2244
/clone="J013059M09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 1111..1968
/db_xref="Osa1:LOC_Os01g09550"
/note="(Rice Genome Annotation Project) ANAC075,
putative, expressed"
/note="mapping to R01-TIGRv4S1-000297R (Chr.1: short
arm=4876674, long arm=4882642, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG89878.1"
/translation="MVSGRQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHLGDLEEEK
EGELVVCKIFYQTQPRQCSWSSDRGGGAAATASAVTTAAVQQDQQRRRDSGSGSCSST
RDHEVSATSYSTAGYAVAAAVEMQHLKHAADHFSFAPFRKSFEEVGISGDQVHSNQLG
RSEQQHAGQEQQPHRPLLATTTAVPATAFLISRPTNPVSNIVPPAMQHASVVLDHDQF
HVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGEASIPHSQETEWPYQPYW
TPDNQDHHG"
BASE COUNT 565 a 578 c 594 g 507 t
ORIGIN
1 ggtttgctct tctactgctc atcctcctcc tctactactc gtcctctttg ctctattcac
61 agctagcaac aagaaggagg cttacacatg catgtgcacg gtctctgccg gacgcatatg
121 aatcaggcat gaataggggg cacatcagca gctcggagct catcgacgcc aagctcgagg
181 aacgccggat ctccacggcc aagcactgcc ccagctgcgg caacaagctc gactgcaaac
241 cggattgggt ggggctaccg gcaggagtca agttcgatcc gacggaccag gagttgatcg
301 agcacctcga ggccaaagtg agggaagaag gctcaagatc tcatcctctc atcgatgagt
361 tcatacccac gatagaaggg gaggacggca tatgctacac ccaccctgag aaacttccag
421 gtgagagtga gagagctaag gtagctatag ctcaaaacat tgcacccccc gcattgtttt
481 gatacagata tattcctggc tttttgcaaa actttatcgg gttttttttg ctttccatgg
541 agtgatatat attgtatgct gggattgttt cgccatgaat tatgggtcgt ggttttggat
601 tttgggatat ggcatatatt cccttgttgt tcttgatgtg ctctcccccc tctctattct
661 tattactagt gtttctctac atgtgctctt ggccggtata tgcaaagaga attattgttt
721 atggaaagtt gtgcctagcc tcatctccca ctctctcctc tctgtcatga tggtaagatg
781 cttctgaagt ttccaaatag gtttctttcc tctcttcctc tttttcagag aggtttgttg
841 catctgtcaa gaagcatagg ccacccactc cacactatac tcttggatct cacaaaactc
901 tctatactac cttgatcctg ctaattattc tgtttgtgct gatcgatcga tggagcaggt
961 gtgacaaggg acggcctgag caagcacttc ttccaccggc cgtcgaaggc gtacacgacg
1021 gggacgagga agcggcggaa gatccagacg gagtgcgacg tgcagaaggg ggagacgagg
1081 tggcacaaga ccggcaagac ccggccggtg atggtgagcg gccggcagaa ggggtgcaag
1141 aagatactgg tcctctacac caacttcggc aagcaccgca agccggagaa gaccaactgg
1201 gtgatgcacc agtaccacct cggcgacctc gaggaggaga aggaagggga gctcgtcgtc
1261 tgcaagatct tctaccagac gcagcctcgg cagtgcagct ggtcctccga ccgcggcggc
1321 ggcgccgccg ccaccgcatc cgccgtgacg acggcggcgg tgcagcagga tcagcagcgc
1381 aggagggaca gcggcagcgg cagctgctcg tcgacgaggg accacgaggt gtcggcgacg
1441 tcctactcga cggccgggta cgccgtcgcc gccgccgtcg agatgcagca tttgaagcat
1501 gccgccgacc atttcagctt cgcgcctttc aggaagagtt tcgaggaggt tggtataagt
1561 ggtgatcagg tacactccaa tcagcttggg aggtcggagc agcagcatgc tggccaggaa
1621 caacagccgc accggccgtt gcttgcaacc acgacggcgg tgcctgccac ggccttcctg
1681 atcagccggc cgacgaaccc tgtatcaaat atagtgccac cagcaatgca gcatgcatct
1741 gtcgttcttg atcatgatca gttccacgtg ccagcaatcc ttctccacca cgacaaattt
1801 cagcagcagc aacaaaagct tgacaggagg tctgccggct tggaggaact gataatgggc
1861 tgcacgtctt cgagcacaaa aggagaagct tcaattcctc actcccaaga gacagaatgg
1921 ccttaccagc catactggac tcctgacaac caggatcatc atggatagta gcaacaaggc
1981 tggtaaatag tgaagatcaa taccaaaaga aaactaacca cattctcttt caccttgtgt
2041 ggtctctgtc ttcttgaata tacaacattg ctttcttgaa gaatgtatgt actacggttg
2101 ggagaagaaa tagattaaag agatctgtat agatctgcct ccatgaaaaa agggagatca
2161 aattaactgt gcaaggacac tccaagatag aagagacaaa gttgttgaaa gaaaaggaaa
2221 gagaggacaa aaaaagtttg ggct
//