LOCUS AK066053 4260 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013052I15, full insert
sequence.
ACCESSION AK066053
VERSION AK066053.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4260)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4260
/clone="J013052I15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..4260
/db_xref="Osa1:LOC_Os11g45750"
/note="(Rice Genome Annotation Project) NBS-LRR disease
resistance protein, putative, expressed"
/note="mapping to R11-TIGRv4S1-000811R (Chr.11: short
arm=27176832, long arm=27183480, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 1164 a 941 c 1024 g 1131 t
ORIGIN
1 gattggattt ggaagctagg aatgaagcaa aatggaagaa ctctctccta agtccaaccg
61 cttggagagc tcgctcatgc tactctgatc atctgatgcc ttcagcttag aagatatcaa
121 tggagggctc catgttcaac ctcccaggaa ggctcgaccg gctcctgcgt cgtcatggca
181 gcatgctgcc caagggggca gaggaggaga tacctctcat caagcaagat ctcgaggaaa
241 taatctccgt cctccatggt cactgtagca agccaaagct ggaggaccat gccatggtgg
301 tcaggtgctg gatgaaggag gtacgtgagc tctcttatga catcgaggat tgcatcgacc
361 agtatgagca tgccgccact gccacccggt cacatactgg acctaatatt tgtcgccgta
421 agttcaatca gcggcatgga aagatgatcc cttgggttcc ctggaaactt aagcagcggt
481 tgtggatggc caacaagatc agagaattca gcctgcgcac ccaggaggcg cttcaacgcc
541 acaccatgta caacaacctt ggtggcatca ccattgcttc tactactgga ggagatgtat
601 gctctgcaac accttggcat cccacgcagt tcagagagca caccgacaac gtctgttctg
661 tcggtataga cgccgatggt atggaagctg ccctgaatga cctgaacaag ctcaaaaact
721 tgctcgctag tatcccgact gcttctctcg tgcagttcag ggagcacgcc aataaagtgc
781 gtcatatcca ccccgatgtg gaagccatcc tgaacaagct caaaaacata cccactggta
841 tcaccactac ttctactacc actagaggtg atgtatcttc tacctcatct aggcaaccca
901 cgcggttcat ggagtccgcg ggtcttgttg gcatcaacgc cgcggtgaac aagcttgaaa
961 acttgctcga tgtgtgcgga gaggagaagc tcaaggtggt gtccatcgtg ggagttggag
1021 gagttggcaa gactacgctc gccaacaagc tgtactgcaa gcttcagcgg cagttcgagt
1081 gctgggcatt tgtgcagaca tctcagaaga ctgatatgag gaggcttctc atcaatatcc
1141 tctcacaggt tcagccgcac cagtcacctg acaattggaa ggtgcatagc ctaatttcca
1201 gtatcaggac acatctgcaa gataagaggt acttgatcat aattgatggt ttatgggcta
1261 catccacatg ggatgttatt aagtgcgctt tgccggatgg taatagttcc agcagaatac
1321 taaccacaac agaaattgag gatctagctt tgcaatcttg tagttatgac ttgaaattta
1381 ttttcaagat gaaacctttt ggtgagggtg actcaagaaa actatttttc agtatagtct
1441 ttggctctca ttctaagtgt cctccagaag tcagtgaaac attatatgat attgtaagga
1501 aatgtggtgg tttgccgcta gctattgtca ctgttgctag tcttttagca agccagcttg
1561 agaaacaaga acaattggat tatataaaca aatccttagg ttacggtttg atggcaaatc
1621 ctactttgga agggatgaaa caactactga acatttgtta caacaatctt cctcagcatt
1681 tgaaggtatg catgttgtat cttagtatgt atcaagaaga tcacataatt tggaaagatg
1741 atttagtgag tcaatggata gctgaaggtt ttatctgtgc aactgaaggg catgacaagg
1801 aagaaatttc aagggcctat tttgatgagc ttgtgggcag aaaaatcatc cagcctgtac
1861 atatcgatga cagtggtgag gttttgtcct gtgtagttca ccatatggta ctcaatttcg
1921 ttacatacaa gtcaatagaa gaaaatttta ttattgcaat agaccattca caggcaacta
1981 taagatttgc tgacaaggtt cgacgattat ctatccactt tagtaacgta gaagatgcaa
2041 ctccgcctac cagtatgaga ttgtcccaag ttcggacagt tgccttcttc ggggtcttga
2101 agtatatgcc tttcgttatg gagtttcgac ttattaaagt tctagttcta catattttgg
2161 gtgatgagga tagcatcggc atttttgatc tcactaaaat ttcagaactt gttcgactga
2221 gatatttgaa ggtcacctct aatgtcaccg taaaactgcc aacccagatg caaggtctac
2281 catatttgga gacactgaaa atagatggga caataagtga agttccaaca gacatttatt
2341 tgccacgttt gctgcatctt actcttcctg ctaagacaaa cctgcccagt ggaattgtcc
2401 acatgacatc gcttcgtaca attggatatt ttgatctcag ctgtaactca gcggagaatc
2461 tatggagcct tggtgagctg agcaatctcc gggatttgca gctcacctat tctgaaatac
2521 attctgacaa tctgaaggat aatatgaaat atcttggatc cattctgggg aaactccgta
2581 atctcacatc tataacttta tcgcctcctg gctcttcctg tccagatact ctacatattg
2641 acaggacgag gatcaatgtt gatggctgga gcagtgtgtc ctctccacca gcccttcttc
2701 agaggtttga gttgttacca tgtgtttgca tcttttctaa cctcccaaat tggattgggc
2761 agcttggaaa cctctgcatt ttgaagattg ggataaggga agtaacaagt aatagtattg
2821 atgttctagg agtattaccg aaactcactg ttttgtcact ttatgtccac acaaagcctg
2881 cagaaaggat tgtctttgac aatgcagggt tctcaatcct caaatacttc gagtttatat
2941 gcagtgtagc atggatgaaa tttgagatgg gtgcaatgcc tagtctaagg aagctcaagc
3001 taggttttga tgtccatata gcagatcagc atgatattat tcctgttggc atcgaacatc
3061 ggtctggact tgaagagatc tctgcaaaaa ttagggtcgc ctgtactgct catgatcatt
3121 gtagaagatt tgcagagtca gctttgacta acgcctttat gatgcatcca ggacgtccta
3181 gcgtcaacat acggtgtgtg gattggacct ttcatgataa ggataatgac tgtgtgggga
3241 cacgagagga agaatgtagg actccaatga aacaggagca ttttgtgaaa gaagacttaa
3301 gtgagaaatc tgcagttcta caaaacgagc acgacgaaga agcacataaa tttgttgaca
3361 gaagatatta tcccatcatg gacgcggcag agatccgcag gtgtccgtgg agcgtcaacg
3421 aggagcagga gcagccggtg ttgatctacg acgccagaac caagatctcc cagtcgtcgt
3481 ccatgcacag cgaattctgg gcggccgtcc aacggctcac cggcccagct gccacgccgg
3541 ccaagaccaa gaggcacctc cacctgacga cctcgcctga gctggaggac ggcttcttgc
3601 cggtacgtag tctcgtcttc ccgtccgctc cggatccacg gtgcaacatg aagaagaaga
3661 agatgagggc cggccctgga gggggtcgag cagtgcggtc aaactgggcc cccaaatcgt
3721 aggggcccca acccagggag cctgcaaagc ctctcttctg caacaaagcc atgcgatgag
3781 atgatgcgaa cagaaacgcc caattcctac tgcaaagcct ctcagtgcct tgccgcctgc
3841 cgagttgccg tcgaccgccc cggcgccgcc gttggctgct gctgcaagcc tgaagacagc
3901 tgcaactgct gatttgctaa actgcgcacc tcagcctaac gatcaaaact aaaagtctca
3961 agaggtgttg atgatgcgaa gtgatcagtt gtttaaaaga tctgagttca gagggattga
4021 gcttggagac gtgctagtgt gtgatgagtc gtgcgcatcc ggacgtctgt gaatatttaa
4081 ttggtaagac tttaaatttg aatttgtagt tttatggtgt aatttatatg agtatctcca
4141 taagtaatgt ttttctttct agtacccgtc actgtggcat attttgaaag aagctttttg
4201 aagtcgaaat tattaaagaa actattgaga tctaaaatgt cgaagaaagt gtttgatgcg
//