LOCUS AK066006 1648 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013044D12, full insert
sequence.
ACCESSION AK066006
VERSION AK066006.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1648)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1648
/clone="J013044D12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1648
/db_xref="Osa1:LOC_Os02g02410"
/note="(Rice Genome Annotation Project) luminal-binding
protein 3 precursor, putative, expressed"
/note="mapping to R02-TIGRv4S1-000051R (Chr.2: short
arm=838742, long arm=840974, direction=reverse) for TIGR
Pseudomol ver4"
BASE COUNT 419 a 387 c 502 g 340 t
ORIGIN
1 gtgttgagaa gaacatcctt gtctttgacc ttggtggtgg gacattcgat gtcagtatct
61 tgaccattga caacggtgtg tttgaggtgt tggccaccaa tggtgacact catcttggag
121 gtgaggactt tgaccagaga atcatggagt acttcatcaa gttgatcaag aagaagtaca
181 gcaaggacat cagcaaggac aaccgtgctc ttggaaagct gaggagggaa gctgagcgtg
241 ccaagagggc cctcagcaac cagcaccagg tccgtgttga gattgagtcc ctctttgacg
301 ggaccgattt ctcggagccg ctgacccgtg ccagatttga ggagttgaac aatgatctgt
361 tccgcaagac catgggacct gtcaagaagg ctatggacga tgctggcctt gagaagagcc
421 agattcatga gattgttctt gtcggtggta gcaccaggat tcccaaggtt cagcagctcc
481 tcagagacta cttcgagggc aaggagccca acaagggtgt caaccctgat gaggctgttg
541 cctatggtgc tgcggttcag ggaagcattc tcagcggcga gggcggtgac gaaaccaaag
601 atatccttct cctggatgtg gcacccctta ccctcggtat cgagactgtc ggtggagtca
661 tgaccaagtt gatccccagg aacaccgtca tccccaccaa gaagtcccag gtgttcacca
721 cctaccagga tcagcagaca accgtctcca tccaggtctt tgagggtgag cgcagcatga
781 ccaaggactg ccgtcttctc ggcaagttcg acctatctgg cattccagca gcaccaaggg
841 gcacccccca gattgaggtg accttcgagg tggacgccaa cggcatcctg aacgtgaagg
901 ctgaggacaa gggcaccggc aagtcggaga agatcacgat cacgaacgag aaggggcgcc
961 tgagccagga ggagatcgac cggatggtgc gcgaggcgga ggagtttgcg gagaaggaca
1021 agaaggtgaa ggagcggatc gacgcccgca accagctcga gacctacgtg tacaacatga
1081 agaacaccgt cggcgacaag gacaagctgg cggacaagct ggagagcgag gagaaggaga
1141 aggtggagga ggccctcaag gaggccctcg agtggctgga cgagaaccag accgccgaga
1201 aggaggagta cgaggagaag ctcaaggagg tcgaggccgt ctgcaacccc atcatctccg
1261 ccgtctacca gaggaccggt ggcgccccgg gtggcggcgc cgacggcgag ggcggcgtcg
1321 acgacgagca tgacgagctg tagatgatga tgatgatgat ctgattcgat tgattcaaag
1381 gagacagcca atttttgtaa gagatggccg gttactttta gtggggtgac ttactactac
1441 cttgggttgg ggtttagggg tagcaagagg ggagagtttt atttgcagaa caccagaaaa
1501 gagactaaat ctctcctctt gttacttgtg ttgctctctt agtttgttac tctgtcgagt
1561 gtagaacagc tcttcctttt gctacttcct tctgatttcc atgtgaactg tgaagaagaa
1621 gaagaaacat aagtaaattt taattact
//