LOCUS AK065989 1796 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013046E14, full insert
sequence.
ACCESSION AK065989
VERSION AK065989.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1796)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1796
/clone="J013046E14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 181..1257
/db_xref="Osa1:LOC_Os03g21030"
/db_xref="RAP-DB:Os03g0327100"
/note="(RAP Annotation release2) Similar to CUC1"
/note="(Rice Genome Annotation Project) GRAB2 protein,
putative, expressed"
/note="mapping to R03-TIGRv4S1-000692R (Chr.3: short
arm=11916277, long arm=11918306, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG89765.1"
/translation="MSEVSVMAEVEETAAAAPLDLPPGFRFHPTDEEIVSHYLTPKAL
NHRFSSGVIGDVDLNKCEPWHLPAMAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYW
KATGKDKEIFRGRGILVGMKKTLVFYLGRAPRGEKTGWVMHEFRLEGKLPSQLPRSAK
DQWAVCKVFNKELALAAKNGPMAVTEATADDAGIERVGSFSFLSDFIDPAELPPLMDP
SFVADIDGVDDAKVSASTSGQAAIAAGFHVASQVMSYQQVKMEEPLPLPYLHQQPPRM
LHSGQYFSLPAVHPGDLTPSAIRRYCKAEQVSGQTSALSASRDTGLSTDPNAAGCAEI
SSAPTSQPFPEFDDGILGLDDFWN"
BASE COUNT 341 a 528 c 531 g 396 t
ORIGIN
1 gaaccccaag tccattctct cgttcccaaa ccctgcatcc ttctctttca cacaagcctc
61 tctctcgccg gcttcggcgt ccgtctcctc ctcctcctct tcgtctagcc ttgtggcggc
121 gtgcggtgcg gtgcggtgag gaaaggaggg agctttgaag gtcgggggag ggcggaggag
181 atgtctgagg tgtccgttat ggccgaggtg gaggagacgg cggcggcggc gccgctggac
241 ctgccgccgg ggttcaggtt ccaccccacc gacgaggaga tcgtctcgca ctacctcacc
301 cccaaggccc tcaaccaccg cttctcctcc ggcgtcatcg gcgacgtcga cctcaacaag
361 tgcgagccat ggcacctccc agccatggcg aagatggggg agaaggagtg gtacttcttc
421 tgccacaagg accgcaagta cccgaccggg acgaggacga accgggcgac ggagagcggc
481 tactggaagg ccaccggcaa ggacaaggag atcttccgcg ggaggggcat cctcgtcggc
541 atgaagaaga cgctcgtctt ctacctcggc cgcgcgcccc gtggcgagaa gaccggctgg
601 gtgatgcacg agttccgcct cgagggcaag ctccccagcc agctcccgcg ctccgccaag
661 gaccagtggg cggtgtgcaa ggtgttcaac aaggagttgg cgctggcggc gaagaacggg
721 ccaatggcgg tgaccgaagc gaccgccgac gacgcgggga tcgagcgggt cggctcgttc
781 agcttcctca gcgacttcat cgaccccgcc gagctgccgc cgctgatgga cccttccttc
841 gtcgccgaca tcgacggggt ggacgacgcc aaggtgtccg cgtcgacctc cgggcaggcc
901 gcgatcgccg ccggcttcca tgtcgcgtcg caggtcatga gctaccagca ggtcaagatg
961 gaagagccgt tgccgctgcc gtacctgcac cagcagccgc cgcggatgct gcactcgggt
1021 cagtacttct cgctcccggc ggtgcacccc ggcgacctga cgccgtcggc gatccggagg
1081 tactgcaagg cggagcaggt ctcggggcag acgtcggcgc tcagcgcctc gcgcgacacc
1141 gggctcagca ccgaccccaa cgccgccggc tgcgcggaga tctcgtcggc gccgacgtcc
1201 cagccgttcc cggagttcga cgacgggatt ctgggcctcg acgacttctg gaactaatcc
1261 actcctgaat gatccggagc tagctcccta ccgaccttgc gctacaggat tttgcttcag
1321 gctggttgat taattacttg atttgattaa ttaacttggt gtttcatgct tgggttaatt
1381 agtggcagtt tgttgatgca tccttctctt cctccttccg atcgaaggct tcttctcggg
1441 atgggttcgg atgatcagat tatttatcat ccatccagac ctccagggat tagctaggac
1501 tccttgttaa ttaatcctag ctagctaggt ttcttcatgt cttgatctga tgtaaataca
1561 attactacta ctaagtacgg ggtatcctga ttgtgtctag tagcatgatg attgattata
1621 ctacaatcaa tggggtgtag attaggggtg gattgatcat ttacgaattg attaatttgg
1681 catttgatga gccagctagc tgctagcttt ataaagcttt atactatgta catgtaccat
1741 taattgcttg agctagacat ctcatcatat gtgaattgat gcttcggttt agcctt
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