LOCUS AK065988 4446 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013043D14, full insert
sequence.
ACCESSION AK065988
VERSION AK065988.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4446)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4446
/clone="J013043D14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..4446
/db_xref="Osa1:LOC_Os01g42410"
/db_xref="RAP-DB:Os01g0609900"
/note="(RAP Annotation release2) Similar to PDR-like ABC
transporter (PDR4 ABC transporter)"
/note="(Rice Genome Annotation Project) PDR5-like ABC
transporter, putative, expressed"
/note="mapping to R01-TIGRv4S1-000961R (Chr.1: short
arm=24433932, long arm=24441826, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 1126 a 959 c 1140 g 1221 t
ORIGIN
1 gtgtcgtcgg aggacggcgg cgccggcggg gagaaggtgg aggtggacgt ggggaggctg
61 ggggcgaggg agagcagggc gctgatcgag cggctggtcc gcgccgccga cgacgaccac
121 gagcggttcc tcctcaagct ccgggagcgg atggaccgcg tggggatcga ctaccccacc
181 atcgaggtgc ggttcgagaa cctcgaggtg gaggccgacg tccacgtcgg caaccgcggc
241 ctccccaccc tcctcaactc cgtcaccaac accgtcgagg caatcgggaa cgcgctccac
301 atcctcccca acaagaagca gccgatgacc gtcctccatg acgtcagcgg gatcatcaag
361 ccccggagga tgaccttgct gctgggacct cctggctcgg gcaagaccac gttgctcctg
421 gcgttggcag ggaagctcga caaggacctc aaggtctcgg ggaaggtgac ctacaatgga
481 cacgggatgc acgagttcgt cccggaaagg accgcggcgt acatcagcca gcatgatctc
541 cacatcgggg agatgaccgt gagggagaca ttggccttct cggcgcggtg ccaaggcgtt
601 ggcactagat atgaaatgct gactgagttg gcaagaaggg aaaaggcagc aaacatcaag
661 ccagatcatg atattgatat ctacatgaag gcctcagcta tgggaggaca agaatctagt
721 gttgttacgg actacatatt gaagatatta ggattggata tttgtgctga tacggtagta
781 ggaaatgaga tgttaagggg tatatctggt ggacaacgga agcgtgtcac aacaggtgaa
841 atgcttgttg gtccagcaag agctttgttc atggatgaga tatccactgg actggacagc
901 tcaaccacgt accagatcgt gaattccctt aggcagacta tccacatcct tggcggaact
961 gctgtcatct cattgctcca gccagcacct gaaacataca acttgtttga tgacattata
1021 ctcctctctg acgggcaggt tgtgtaccag ggtccccgtg aacatgtgct tgagttcttt
1081 gagttcatgg gcttcagatg ccctgccaga aagggtgttg ctgatttctt gcaggaggtg
1141 acatcaagga aagatcaggg gcagtactgg tgtaggcgtg acagaccata ccgttttgtg
1201 ccagtgaagc aattcgcaga tgcgttccgt tccttccatg tgggccgatc catacagaat
1261 gagctttctg agccatttga taggaccagg agccaccctg ctgctctggc tacttcaaag
1321 tatggtgtca gcaggaagga gttgctcaaa gccactatcg atagagagct tcttctcatg
1381 aagaggaatg catttatgta catttttaaa gctgttaatc taactctaat ggcattgatc
1441 gtgatgacca catttttccg taccagcatg cgacatgata gagattatgg aatgatctat
1501 ctgggggcat tgtactttgc tcttgacaca gtcatgttta atggtttcgc agagcttgcc
1561 atgactgtca tgaaactacc tgttttcttc aagcaaaggg atcttctctt ctttcctgca
1621 tgggcctaca ccataccatc atggattctt cagattccta tcacatttct cgaagttggt
1681 gtttatgttt tcataacata ctatgtcatt ggatttgatc ccagtgtaag caggttcttc
1741 aagcagtatc tgctgctact tgcactcaac cagatgtcat ctgcactatt ccgcttcatt
1801 gctggaatcg gaagagacat ggttgtgtct cacacatttg gacccttatc actgttggct
1861 tttgcagcat tgggtggctt tatccttgca agacctgacg tgaagaaatg gtggatttgg
1921 ggttactgga tatccccgct atcgtatgca caaaatgcta tttcgacaaa tgaatttttg
1981 ggtcacagtt ggagccaaat acttcctgga gaaaatgtga ccttgggagt tagtgtacta
2041 aaatctcgtg gtatctttac tgaagctaag tggtactgga ttggacttgg tgctttgctt
2101 ggatacactc tcctctttaa cctgctctac actgtagctc tttcagtttt gagtccattc
2161 actgactctc atgcatcaat gtctgaggac gcattgaaag agaagcatgc caacttaacc
2221 ggtgaagttg tagagggaca gaaggacact aaatctagga agcaggaatt ggaattgtcc
2281 catattgctg accaaaactc tggaattaac agcgctgatt ctagcgcaag caggaaggga
2341 atggtgctcc catttgcacc actatctatt agttttaacg acgtaagata ctcagtggac
2401 atgccagagg caatgaaagc acaaggcata acagaagacc gtttgttgct tctaaagggt
2461 gttagtggtt ctttcaggcc aggtgtactt actgcattga tgggtgtaag tggtgccggg
2521 aagacaacac tgatggatgt tttagcaggg agaaaaactg gaggatacat agagggagat
2581 attagaatat ctggctatcc aaagaagcaa gagacctttg cacgtatatc acgatattgt
2641 gagcaaaatg acatccattc tccccatgtg acagtatatg aatcacttgt gttctctgca
2701 tggctgcggc taccctcgga ggttgattca gaagcaagaa agatgtttat tgaggaggtc
2761 atggatcttg tagagctcac atctctgagg ggagcacttg ttgggcttcc tggagtgagc
2821 ggcctgtcaa ctgagcaacg caagagactt actattgctg tggagcttgt tgcaaaccct
2881 tcaattattt ttatggatga gccaacatct ggtcttgatg ctcgggcagc tgcgattgtg
2941 atgaggaccg taaggaacac cgttaacact ggcaggactg ttgtttgtac cattcaccag
3001 ccaagtattg acatctttga agcatttgat gagcttttcc taatgaagag aggaggtgaa
3061 gagatatatg ttggtccagt gggccagaat tcctcaaaac tgattgagta ctttgaggga
3121 attgatggcg ttagtaggat aaaagatgga tataatccag caacatggat gttggaagtg
3181 acctcttcag cccaggagga gatgctcggt gttgatttta gtgaaatcta caggcagtca
3241 gagttatatc aaaggaacaa ggaacttatt gaggagctaa gcacaccacc tcctggctct
3301 actgatctca acttccctac gcagtactct agatcgttca ttacacagtg cctagcttgc
3361 ttgtggaagc agaattggtc atattggagg aatccatcct acactgcagt gagattactc
3421 ttcactatcg tcattgccct aatgtttgga acaatgttct ggaaccttgg aacgagaact
3481 aaaaaacaac aggatctatt caatgccatg ggatcaatgt atgctgcagt tctctacatt
3541 ggagtgcaaa actctggttc tgttcaacca gtggtggtgg tggagcgaac agtcttttac
3601 cgagaaagag cagctggcat gtattcagct ttcccgtatg catttggaca ggttgcaatt
3661 gagttaccat acatcatggt tcagactctg atatatggcg tgctggtata ctcaatgatt
3721 ggatttgagt ggactgttgc caagttcttg tggtacttgt tcttcatgta cttcacactg
3781 ctatatttca cattttacgg aatgacggcg gtagggttga caccaaatga gagcatagca
3841 gcaatcatct cgtccgcttt ctacaatgtg tggaacctct tctcaggata tctgatccct
3901 cgaccgaaaa tccctgtttg gtggaggtgg tactgttgga tttgcccggt tgcatggact
3961 ttgtatggat tagttgcttc ccagtttggt gatatccaac atgtgctcga aggcgacacc
4021 agaactgttg cacagtttgt cactgattac tttggcttcc atcataactt cctgtgggtg
4081 gtggccgtgg tgcacgtcgt cttcgccgtg accttcgcct tcctcttcag ttttgcgatc
4141 atgaagttca acttccagag gagatgagaa agtgatcatt cttttttgca ttcgttctat
4201 tgtactactg aatagctatt agctatcctg taaatggtat agagatcatc ttctagtatt
4261 tcattatttc aagcatgtaa aaattcggac atctagtagg attctctagg aaaaagaacc
4321 cttgttgagc ttcctgcctc ttgaccagct ctagctgata aatgtcggat gcagatgaat
4381 gtaaagtatg gccttcaatg ttttcatttt tgtcgaatta atgaaagcag aaaatttgtt
4441 gattct
//