LOCUS AK065936 3338 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013045A03, full insert
sequence.
ACCESSION AK065936
VERSION AK065936.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3338)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3338
/clone="J013045A03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3338
/db_xref="Osa1:LOC_Os11g32110"
/db_xref="RAP-DB:Os11g0523800"
/note="(RAP Annotation release2) Transcriptional factor
B3 family protein"
/note="(Rice Genome Annotation Project) auxin response
factor 2, putative, expressed"
/note="mapping to R11-TIGRv4S1-000548R (Chr.11: short
arm=18433892, long arm=18440180, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 862 a 736 c 894 g 846 t
ORIGIN
1 ggtttttttt ttcttctttt ttctcgctta aattcaccca gtaaaaaaaa aatttaaaac
61 aaaagagagg agaggagagg aagaagagga ggtggtggag gaggaggagg agaagctgct
121 tgtgctgctg ctgcgaatcg gaggggaatt cgagggggcg gggggcgcga atccggcggg
181 ggaattcgcg cgattcgggc gtggccgcgg gggatgtgaa gatctggtgg ggtgatggcg
241 acggcggagg tcggcggcgg cggcggtgag ggggatgctg ctgccgcggc ggtggcgcga
301 ggcggcggcg gcggaggagg aggaggagga ggggaggacg cgctgttcac ggagctgtgg
361 agcgcgtgcg cggggccgct ggtgacggtg ccgagggttg gggagaaggt gttctacttc
421 ccgcaggggc acatcgagca ggtggaggcc tcgaccaacc aggtaggcga gcagcggatg
481 cagttgtaca atctcccatg gaagatcctg tgtgaggtta tgaacgttga gctgaaggcc
541 gagccagaca ccgacgaggt ttatgctcag ctcactctgc ttcctgaatc gaagcaacaa
601 gaagataacg gctctactga ggaggaggtg ccttctgctc cagcagctgg gcatgttagg
661 ccacgggtgc actcattctg caagacattg accgcctcgg acacgagcac acatggcggc
721 ttctcggtgc tgcgacgcca cgcggacgaa tgcctcccac cactggatat gagccgtcag
781 cctccaacac aagagctggt ggccaaggat ctgcacggtg tggaatggcg ctttcgtcac
841 atattcagag gtcaaccacg aagacacctt ttgcagagtg gctggagtgt gtttgttagt
901 gccaaacggc ttgttgctgg ggatgccttt atctttctca gaggtgagaa cggggaactg
961 cgtgttggag tcaggcgtgc aatgaggcag caaactaatg ttccatcttc agtgatatca
1021 agccacagca tgcatcttgg ggttcttgcc acagcatggc atgctgttaa cacagggacc
1081 atgttcactg tctactacaa gcctaggaca agtccagccg agtttgtggt cccttacgat
1141 cgctatatgg aatcactgaa acaaaattac tccattgaga tgagatttaa gatgaggttt
1201 gaaggtgaag aggctccaga gcaaagattc actgggacta ttgtcggaat gggggattct
1261 gatccagctg gctggcctga atcaaaatgg cgctccctta aggtttattt ctttcgccac
1321 tttccattta aataacattt attttctgag aatttcttac agatttttgt gttacttagg
1381 tgagatggga tgaagcttct tccatacctc gccctgaaag agtttctccc tggcaaatag
1441 aacctgctgt aagccctcct cctgtcaacc cactaccagt tccaagaacc aagaggcttc
1501 gtccgaatgc taccgctttg ccggctgact cttctgctat agcaaaagaa gctgctacga
1561 aagttgtggt cgagtctgaa ccaaatggta cgcaaaggac cttccagaca caagagaatg
1621 caaccccaaa aagtggtttc ggcaatagca gcgagttaga aagtgctcag aaatcaatca
1681 tgcgtccatc tggatttgat cgtgagaaaa ataacactcc catacagtgg aagctaggtt
1741 cagatggtcg gatgcagatg agcaagcctg agagttacag tgagatgcta tctggatttc
1801 agccacctaa agatgtacaa atcccacagg gtttctgttc tttacctgag cagattactg
1861 caggccattc taacttctgg cacacagtaa atgctcagta tcaagatcaa cagagcaatc
1921 acaatatgtt ccccagctca tggtccttca tgcctccaaa tactcgcctt ggattaaaca
1981 aacagaacta ttcaatgatt caggaagctg gtgtgttgtc tcaaaggcct ggaaatacaa
2041 agtttgggaa tggagtttat gctgcactgc caggccgagg tactgagcaa tactcagggg
2101 gttggtttgg ccatatgatg ccaaattccc acatggatga tacacagcca cgcctgatca
2161 agcctaaacc tctggttgtt gcccatggtg atgttcagaa agctaaaggt gcttcatgca
2221 aactatttgg aattcacctt gacagcccag cgaaatctga acctttgaaa tctccatcaa
2281 gtgttgtata tgatgggacg ccacaaacac caggtgctac tgaatggcgc cgaccagatg
2341 taactgaagt agagaaatgt tctgatcctt ctaaggccat gaagccactt gatactccgc
2401 aaccagactc tgttcctgag aagccttctt ctcagcaagc ttcacgaaac atgtcgtgca
2461 aatcacaagg tgtatcaact agaagctgca agaaggtcca caagcaaggc attgcacttg
2521 gcaggtctgt ggaccttaca aagtttaatg gctatgaaga gttgattgct gagctggatg
2581 acatgtttga tttcaatggt gaactgaagg gtcctaagaa ggagtggatg gttgtctaca
2641 ctgacaacga aggtgacatg atgctagttg gggatgatcc ctggattgaa ttctgcgaca
2701 tggttcacaa gatcttcatc tacacaagag aagaggttca gcggatgaat ccgggaaccc
2761 tgaactcaag atcagaagat agtcatgcta attcaatgga aaggggctca gtcggcagag
2821 aaatgcgagg ctgcttgtca acctcgtctc ttaattctga gaactgctaa tgctttccca
2881 tctggtcttt tgaagtaaca tgggagacaa gaacgcgatg catcgttata agaaaatgca
2941 tttcgtagtg gagttaatgc tttttttccc cctttgatgt attggataag ctcaaagtac
3001 cctatttgta gatggtgctt gtccttggtg gtcaagttgc actcttattt gctgcagttt
3061 tggttttcta ttttggtgag gtaagttgtc agccgccagt cctaccatat aaatgttggt
3121 atgcgtagaa aagtaagctc agccctccca ccctgcactt cctctctctc agcactaagc
3181 tgccacctcc ttgtaaatag cccctgttta attgagtcta atatattatc taccttaact
3241 gacattcctt tgtttcatct tgctaaatta tagcagtagc ctggtaagat tattgtagcc
3301 caaattaaca tgtgatctga gattttattt ttgctttc
//