LOCUS AK065819 2343 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013043D01, full insert
sequence.
ACCESSION AK065819
VERSION AK065819.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2343)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2343
/clone="J013043D01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2343
/db_xref="Osa1:LOC_Os04g53540"
/note="(Rice Genome Annotation Project) homeobox protein
GLABRA2, putative, expressed"
/note="mapping to R04-TIGRv4S1-001116R (Chr.4: short
arm=31681220, long arm=31688016, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 470 a 645 c 662 g 566 t
ORIGIN
1 ggtgttcccc ttttcttctc ctcttcttct tcctctcctc ctcctgatcc tgatcgagaa
61 gatctcacct tgatctcttg ccgtgtgatc tctagctctc gctagccctc tgaaccttgc
121 agtttgttgt ttgcacccgg tgaaacatct tcttttgtgc aggtaggaga gacagcaaag
181 cagagataag agttctatat ttgcatgtag ttcttgtctt ggatctcact ggctggctgt
241 ctcctctctg cagcaaggtt cgttgggcta gcttgtgtgc tagatctgtt tctacttgcg
301 tttgcgttgc ttggcaagca agatatatat atatatatct atatctatct atctatcatt
361 ctatctccct acatatttag agctagcact ttgtgtgttc tttgggtttg ggacacactc
421 atatacgcgt gttcatgagt ggaaatggaa ggagctgcaa gggcaagaat tagggtttga
481 gatataggag tataatgatg atcccggcga ggcatatgcc gtcgatgatc ggccggaacg
541 gcgcagcgta cggatcctca tcggcactgt cactcagcca gccaaacttg ctggataatc
601 accagttcca gcaagcgttc cagcatcagc agcagcagca tcatgacgca cgccaacctc
661 gtcgagatcc tcatggacgc gaatcagtac gcggcagtgt tctcgaacat cgtgtcgagg
721 gccatcacgc tggaggtgct gtccaccggc gtcgcgggga actacaacgg tgcattgcaa
781 gtgatgtcag tggagtttca ggtgccatcg ccactggtgc caacgagaga gagctacttc
841 gtgagatact gcaagcagaa cgcagacggg acatgggccg tcgtcgacgt ctcgctggac
901 agcctccgcc ctagccccgt cctcaaatgt cgccgccgtc cgtcaggctg cctcatccaa
961 gaaatgccca atggctactc caaggtgacg tgggtggagc atgtggaggt ggacgacagg
1021 tcggtgcaca acatctacaa gctgctggtg aactccgggc tggcgttcgg cgcgcggcgg
1081 tgggtcggca cgctggaccg ccagtgcgag cgcctcgcca gcgtcatggc cagcaacatc
1141 cccaccagcg acatcggcgt gattacgagc tcggagggga ggaagagcat gctgaagctg
1201 gcggagagga tggtggtgag cttctgcggc ggcgtgacgg cgtcggtggc gcatcagtgg
1261 acgacgctgt ccggcagcgg cgccgaggac gtccgcgtca tgacgaggaa gagcgtcgac
1321 gaccccggga ggccccccgg catcgtcctc aacgccgcca cctccttctg gctccccgtc
1381 cctcccaagc gcgtcttcga cttcctccgc gacgaatcct ctcgcagtga gtgggacatc
1441 ctctccaatg gcggtatcgt tcaagaaatg gcccacatcg ccaatggccg ggatcagggc
1501 aactgcgtct cacttcttcg cgtcaacagc tcgaactcga accagagcaa catgctgatc
1561 ctgcaggaga gctgcacgga cgcgtcgggg tcgtacgtca tctacgcgcc ggtggacgtg
1621 gttgcgatga acgtcgtgct aaacggcggc gacccggact acgtcgcgct gctgccatcg
1681 ggcttcgcca tcctgcccga tgggccggcg cacgacggtg gcgacggcga cggcggcgtc
1741 ggcgtcggct ccggcgggtc gctgctgacg gtggcgttcc agatactggt ggactccgtc
1801 ccgacggcga agctctcgct ggggtcggtg gcgacggtga acagcctcat cgcctgcacg
1861 gtggagcgca tcaaggcggc cgtctccggc gagagcaatc cgcagtagct tcgtccttga
1921 atcaaacaaa agcttcttgt gctttcaatt tcaggagcag caaaattttg gagctttcat
1981 cagtgggaag tcaagaacgc acctcagact gtccttgcca tgtggtgccc atatatagtt
2041 tggattattt ttcgctagtt tttccgcaaa ttcgggaaat ttcaaaaaaa atgtgtcacc
2101 actacgcaag ggcggttggt tcgggtattg acttcctctt catgttcgcc tctcggatgc
2161 tgctacctta tgaatttagg gttcttctgg agtacaaaaa aaacccctta atttgatctg
2221 taatttctgt tgttcagact tcccagtacc tagctagcta gtaggagttg cagaatagag
2281 atctgtgtcc ctgtcttata cttttagttc tcttcagtgt ttgatcagtg ctgtttcaat
2341 ccg
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