LOCUS AK065819 2343 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013043D01, full insert sequence. ACCESSION AK065819 VERSION AK065819.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2343) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2343 /clone="J013043D01" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2343 /db_xref="Osa1:LOC_Os04g53540" /note="(Rice Genome Annotation Project) homeobox protein GLABRA2, putative, expressed" /note="mapping to R04-TIGRv4S1-001116R (Chr.4: short arm=31681220, long arm=31688016, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 470 a 645 c 662 g 566 t ORIGIN 1 ggtgttcccc ttttcttctc ctcttcttct tcctctcctc ctcctgatcc tgatcgagaa 61 gatctcacct tgatctcttg ccgtgtgatc tctagctctc gctagccctc tgaaccttgc 121 agtttgttgt ttgcacccgg tgaaacatct tcttttgtgc aggtaggaga gacagcaaag 181 cagagataag agttctatat ttgcatgtag ttcttgtctt ggatctcact ggctggctgt 241 ctcctctctg cagcaaggtt cgttgggcta gcttgtgtgc tagatctgtt tctacttgcg 301 tttgcgttgc ttggcaagca agatatatat atatatatct atatctatct atctatcatt 361 ctatctccct acatatttag agctagcact ttgtgtgttc tttgggtttg ggacacactc 421 atatacgcgt gttcatgagt ggaaatggaa ggagctgcaa gggcaagaat tagggtttga 481 gatataggag tataatgatg atcccggcga ggcatatgcc gtcgatgatc ggccggaacg 541 gcgcagcgta cggatcctca tcggcactgt cactcagcca gccaaacttg ctggataatc 601 accagttcca gcaagcgttc cagcatcagc agcagcagca tcatgacgca cgccaacctc 661 gtcgagatcc tcatggacgc gaatcagtac gcggcagtgt tctcgaacat cgtgtcgagg 721 gccatcacgc tggaggtgct gtccaccggc gtcgcgggga actacaacgg tgcattgcaa 781 gtgatgtcag tggagtttca ggtgccatcg ccactggtgc caacgagaga gagctacttc 841 gtgagatact gcaagcagaa cgcagacggg acatgggccg tcgtcgacgt ctcgctggac 901 agcctccgcc ctagccccgt cctcaaatgt cgccgccgtc cgtcaggctg cctcatccaa 961 gaaatgccca atggctactc caaggtgacg tgggtggagc atgtggaggt ggacgacagg 1021 tcggtgcaca acatctacaa gctgctggtg aactccgggc tggcgttcgg cgcgcggcgg 1081 tgggtcggca cgctggaccg ccagtgcgag cgcctcgcca gcgtcatggc cagcaacatc 1141 cccaccagcg acatcggcgt gattacgagc tcggagggga ggaagagcat gctgaagctg 1201 gcggagagga tggtggtgag cttctgcggc ggcgtgacgg cgtcggtggc gcatcagtgg 1261 acgacgctgt ccggcagcgg cgccgaggac gtccgcgtca tgacgaggaa gagcgtcgac 1321 gaccccggga ggccccccgg catcgtcctc aacgccgcca cctccttctg gctccccgtc 1381 cctcccaagc gcgtcttcga cttcctccgc gacgaatcct ctcgcagtga gtgggacatc 1441 ctctccaatg gcggtatcgt tcaagaaatg gcccacatcg ccaatggccg ggatcagggc 1501 aactgcgtct cacttcttcg cgtcaacagc tcgaactcga accagagcaa catgctgatc 1561 ctgcaggaga gctgcacgga cgcgtcgggg tcgtacgtca tctacgcgcc ggtggacgtg 1621 gttgcgatga acgtcgtgct aaacggcggc gacccggact acgtcgcgct gctgccatcg 1681 ggcttcgcca tcctgcccga tgggccggcg cacgacggtg gcgacggcga cggcggcgtc 1741 ggcgtcggct ccggcgggtc gctgctgacg gtggcgttcc agatactggt ggactccgtc 1801 ccgacggcga agctctcgct ggggtcggtg gcgacggtga acagcctcat cgcctgcacg 1861 gtggagcgca tcaaggcggc cgtctccggc gagagcaatc cgcagtagct tcgtccttga 1921 atcaaacaaa agcttcttgt gctttcaatt tcaggagcag caaaattttg gagctttcat 1981 cagtgggaag tcaagaacgc acctcagact gtccttgcca tgtggtgccc atatatagtt 2041 tggattattt ttcgctagtt tttccgcaaa ttcgggaaat ttcaaaaaaa atgtgtcacc 2101 actacgcaag ggcggttggt tcgggtattg acttcctctt catgttcgcc tctcggatgc 2161 tgctacctta tgaatttagg gttcttctgg agtacaaaaa aaacccctta atttgatctg 2221 taatttctgt tgttcagact tcccagtacc tagctagcta gtaggagttg cagaatagag 2281 atctgtgtcc ctgtcttata cttttagttc tcttcagtgt ttgatcagtg ctgtttcaat 2341 ccg //