LOCUS AK065697 1215 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013037L21, full insert
sequence.
ACCESSION AK065697
VERSION AK065697.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1215)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1215
/clone="J013037L21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 211..804
/db_xref="Osa1:LOC_Os01g42190"
/db_xref="RAP-DB:Os01g0606900"
/note="(RAP Annotation release2) Heat shock protein DnaJ,
N-terminal domain containing protein"
/note="(Rice Genome Annotation Project) dnaJ-like
protein, putative, expressed"
/note="mapping to R01-TIGRv4S1-000985F (Chr.1: short
arm=24238364, long arm=24240088, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG89626.1"
/translation="MQQGRGRRRMMQGSSYYAVLGVHPGASAAEIRAAYHRLAMKWHP
DKITSGRVDAEEAKSRFQQVHEAYQVLSDEKRRALYDSGMYDPLDDDQEEDVEGFHDF
LQEMVSLMATVGREEPVYCLDELRSMLDGMMQDFASSELPSPSGGFFAGAPSSPFADT
GAAQQQRGVGSASARAHAHPQVVGNSACLSRMAFSSY"
BASE COUNT 234 a 345 c 382 g 254 t
ORIGIN
1 ggaggcctct cctcgacgtc gcccgtacat tctccagccg cgccatcgtt ctttcacttc
61 acccccaatg ttgttctagc ccccgcgcca cccaagatag atagattcat cgcgatcgat
121 cgagcgggag gtagagacta gagagggata gtgtgtgctg ctgctgctgc gtcggagtag
181 gatatcgcga tcgatcggtc gatcgggcgg atgcagcagg ggagggggag gaggaggatg
241 atgcagggat cgtcgtacta cgccgtgctc ggcgttcacc ccggcgcgtc cgccgccgag
301 atacgcgccg cgtaccaccg cctcgccatg aagtggcacc cggacaagat caccagcggc
361 cgcgtggatg cggaggaagc caagagcagg ttccagcagg tgcacgaggc gtaccaagtg
421 ttgtctgacg agaagaggag ggcgctctac gactcaggca tgtacgaccc gctcgacgac
481 gaccaggagg aggacgtcga gggcttccac gacttcctcc aggagatggt gtccctcatg
541 gccacggtag gaagagagga gcccgtgtac tgcctggacg agctccgctc catgctggac
601 gggatgatgc aggatttcgc ctcgtccgaa ttgccttcgc ccagcggcgg cttcttcgcc
661 ggcgcgccct cctcgccgtt cgccgacacc ggcgccgcgc agcagcagcg cggggtcggc
721 tccgcctccg cgcgcgcgca cgctcatccc caggtggtcg gcaactctgc ctgcctcagc
781 cggatggcct tctccagcta ctgagatcaa tttttgccag cggccgcaac atcatcacct
841 gcatagatta gctagcctcg tcgacatcga gtgagagtga gtagtcggcg gcggtgcggc
901 gccgccccct gctgccgatg aggcgcgtca gcgtcgtgat ctcatgaagg tgcatgcaga
961 aaggtggcaa ggcagggcac tggaacaaag tatttctgtt tattttcttg tcttgtttcg
1021 atgggatggg ctctgcagcg agaactgtct atactgttcc gagtgtaccg tgacaatgtg
1081 atatcacggg actgtttgcc tttgtacagt ttcatgataa acaatctgaa gtagtagtaa
1141 tgaactagtg acaatgatga tgatgatcgt cgttgttccg ttctgttagg atgatgggac
1201 gatccctttg gtgtg
//