LOCUS AK065683 2936 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013037K06, full insert
sequence.
ACCESSION AK065683
VERSION AK065683.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2936)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2936
/clone="J013037K06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 142..2562
/db_xref="Osa1:LOC_Os06g04880"
/db_xref="RAP-DB:Os06g0140800"
/note="(RAP Annotation release2) Protein kinase-like
domain containing protein"
/note="(Rice Genome Annotation Project) ATP binding
protein, putative, expressed"
/note="mapping to R06-TIGRv4S1-000124R (Chr.6: short
arm=2139055, long arm=2145617, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG89620.1"
/translation="MEIEEAGGAGEDELEMEAPSVSTVAIAVNGSRNSKHALKWALDK
FVPEGKVLFQILHVRPTIKMVPTPMGNFIPITQVREDVATAYKKEVEWQANNMLLPYK
KMCAQRKVEAEAVLLESDDVPTAISEEISKFSVCKLVLGSSSSIFRRKNKGSKTATKI
CECIPSFCTAYVVSKGKLSSVHSATSDAIGTPESISSSTVSSPSSRSFSSSVPSEWGD
TYGSANVSFHQPSLSSQRDQAIANMNKLSNRRASPSGSGGSEISNHDDTVLTSSHSIN
SETRFSSSSSGNSIYKSFNRDRSFDNSDQASVSDMATNLKHSHDQEYLKLEIERLRVK
LRHLQKLNELAQKESLDANQKLHKLGIQDIEDEIKLKETELTEEKVRRLIRKKEREEQ
EVARREDQLRNENAESEATKQSNGNQEGDENKTGERIFVRCFDEYNRYTWEEIKASTL
SLSEDLMIGRGSYGTVYKAKFHHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLL
LMLGACPEHGCLVYEFMENGSLDDMLQRRNNTPPLTWFDRFRIAWEVATALMFLHSSK
PEPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMDQYLSTMIKNTAPVGTFCYIDP
EYQRSGVVSMKSDVYALGIVILQLLTAKSPMGIAHVVETALEDGHFVDILDAAAGQWP
LNEAQELAFLALKCAEMRRRDRPDLSDHVLPALERLKDVATKAREMAFNGHQTAPPSH
FICPILQEVMADPYVASDGYTYDRKAIELWLSMNDKSPMTNLRLPHKSLIPNHSLRSA
IIDWRTKS"
BASE COUNT 872 a 617 c 711 g 736 t
ORIGIN
1 ggtcggcacc tctagcttga ctctataccc gtcgtcttca gtctcctcct cccctctcat
61 cgccactctc ctcgtctcct ccatgcctca gagtgattag ttgagaggag gaatcaagaa
121 tcgagggaga gggtgaggga gatggagatc gaggaggcgg gcggcgccgg ggaggatgag
181 ctggaaatgg aggctccgag cgtgagcacg gtggcgattg cggtgaacgg gagcaggaac
241 agcaagcacg cactcaagtg ggctctcgac aagttcgtcc ccgaaggaaa ggtcctcttc
301 cagatcttgc atgtccgccc caccatcaag atggtgccaa ctccaatggg caatttcatt
361 ccaatcacac aagtgcgtga agacgtagca actgcataca agaaagaagt ggaatggcaa
421 gcaaacaata tgttgcttcc ttacaagaag atgtgtgctc agagaaaggt agaagctgaa
481 gctgttttac tcgaatctga cgatgtgcct actgctataa gcgaagaaat cagcaaattc
541 agtgtctgca agttagtttt aggttcttct agcagcatat tccgaaggaa aaacaaagga
601 agtaagactg cgaccaaaat ctgtgagtgc attccaagct tctgcacagc atacgttgtc
661 tcaaaaggaa aactatcatc tgtgcactca gctacatctg atgccatcgg aacacctgaa
721 tccatttctt cttcaactgt ttcatcccca agctctagaa gcttttcatc cagtgtaccc
781 tcagaatggg gagacacata tgggtcagca aatgtgtcat tccaccagcc atctctgtca
841 tctcagcgtg accaagcaat tgcaaacatg aataagttat ccaacaggag agctagccct
901 tcaggcagtg gtgggagtga gatctccaac catgatgata cagtcctgac aagttcacac
961 tcgatcaatt cagaaacacg gttcagtagc agcagcagtg ggaattctat ctataagagc
1021 ttcaatagag atcgttcatt tgataactct gatcaggcat ccgtgtcaga tatggcaaca
1081 aatctgaaac attctcatga ccaggagtat ctaaagcttg agattgagag gctgagggtt
1141 aaactacggc atcttcagaa gcttaatgag ttagctcaga aagaatcatt ggacgccaat
1201 cagaaattac ataagttggg catccaggac attgaggatg aaattaagct taaagagaca
1261 gaactgacag aagaaaaggt aaggagattg ataaggaaaa aagagagaga agaacaggaa
1321 gttgccagaa gagaagatca attaagaaat gaaaatgctg aaagtgaagc aacaaaacag
1381 agtaatggca atcaggaagg tgatgagaat aagacaggag agaggatttt cgtgcgctgt
1441 tttgacgagt ataacaggta tacctgggag gagataaaag catcgacttt gtcactgtct
1501 gaggatctta tgattggcag gggatcatat ggtacagtgt acaaggctaa gtttcatcat
1561 acagttgcag cagtaaaagt tctgaactcc cctgaaggct gtggaactca gcaattacaa
1621 caggagcttg aggtcctagg taaaatccgg caccctcact tgctcctgat gctaggtgca
1681 tgccctgagc atggttgctt ggtctacgaa ttcatggaaa atggcagctt ggatgacatg
1741 ctgcaacgga gaaataatac accgccattg acctggtttg accgtttcag aattgcttgg
1801 gaggttgcaa ctgctcttat gttccttcac agttccaaac cagagcctat catacaccgg
1861 gatctgaagc ccgcaaacat attgcttgac aggaacttgg ttagcaagat aggtgatgta
1921 ggtctatcaa ctttgcttcc aagtatggat cagtacctgt ccacaatgat caagaacact
1981 gctccagtgg gcactttctg ttacatagac ccagagtatc agagaagtgg cgtggtctcc
2041 atgaagtccg atgtttatgc tctagggatc gtgatcttgc aattgctgac agcgaagtca
2101 ccaatgggga ttgcccatgt tgtggagact gcactagaag atggacactt cgtggacatt
2161 ctggatgcag ctgctgggca gtggcctttg aatgaggcac aagaattggc tttcctagcc
2221 ctaaagtgtg ccgaaatgag gcgcagagac cggcccgact tgagcgatca tgttcttcca
2281 gcattggagc ggctgaagga tgttgcaacc aaggccagag aaatggcttt taatggccac
2341 caaacagcac ctccaagtca cttcatttgc cccatacttc aggaagtgat ggctgatcca
2401 tatgtcgcat cggatgggta cacatatgac cggaaggcga tcgagctgtg gctaagtatg
2461 aatgacaagt cccctatgac aaatctgaga ttgcctcaca agagccttat accaaatcac
2521 tcgcttcgtt ctgcaatcat cgactggaga acaaagagtt agtagctggt acacattctg
2581 gcctgcattc tccagaatgt agcagttgat gattgatttt cttctcaagg tgtaaatttt
2641 ttgcagatct catgtagaag tagtcttcat gttggttcca aaaataaaaa ataaaataaa
2701 ataagtggtg ttcataaaga ggttcaagtt gtgcagcttt atcaaatagt agtagtagaa
2761 attgtttcct actagctcat aggcaaacac cttccacctc actgtcttag tgaatggtga
2821 acaattattt ttttctcctt tgccattcat aatgatgtgt tgtaagcttg taattagtgc
2881 tctcaacatt tgatctgatt gtaggaaatc ttaatgaaaa ttcagtatga agcttt
//