LOCUS AK065656 2156 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013039E17, full insert
sequence.
ACCESSION AK065656
VERSION AK065656.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2156)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2156
/clone="J013039E17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 187..1707
/db_xref="Osa1:LOC_Os01g53930"
/db_xref="RAP-DB:Os01g0742500"
/note="(RAP Annotation release2) Similar to Hexokinase"
/note="(Rice Genome Annotation Project) hexokinase-1,
putative, expressed"
/note="mapping to R01-TIGRv4S1-001308R (Chr.1: short
arm=31336472, long arm=31340802, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG89607.1"
/translation="MGKGTVVGTAVVVCAAAAAAVGVAVVVSRRRRSKREAEEERRRR
AAAVIEEVEQRFSTPTALLRGIADAMVEEMERGLRADPHAPLKMLISYVDNLPTGDEH
GLFYALDLGGTNFRVIRVQLGGREKRVVSQQYEEVAIPPHLMVGTSMELFDFIAAELE
SFVKTEGEDFHLPEGRQRELGFTFSFPVHQTSISSGTLIKWTKGFSINGTVGEDVVAE
LSRAMERQGLDMKVTALVNDTVGTLAGGRYVDNDVAAAVILGTGTNAAYVEHANAIPK
WTGLLPRSGNMVINMEWGNFKSERLPRSDYDNALDFESLNPGEQIYEKMISGMYLGEI
VRRILLKLAHDASLFGDVVPTKLEQRFILRTPDMSAMHHDTSHDLKHLGAKLKDILGV
ADTSLEARYITLHVCDLVAERGARLAAAGIYGILKKLGRDRVPSDGSQKQRTVIALDG
GLYEHYKKFRTCLEATLADLLGEEAASSVVVKLANDGSGIGAALLAASHSQYASVE"
BASE COUNT 505 a 467 c 660 g 524 t
ORIGIN
1 gagaggagag agactgaggg agggaggcag gaggaaggag gaggagtagg acgctgcagt
61 ggtgggtggc gtagctcccg atccgggaag ccgacccggt ctgggggatt tgctcctggc
121 gcgcgctcga tcgagaggga ggccagggtt gggttggggg gagcgtgaag aagcgcgcgc
181 gcggctatgg ggaaggggac ggtagtgggg acggcggtgg tggtgtgcgc tgcagcggcc
241 gcggcggttg gggtggcggt ggtggtgtcg cggaggagga ggagcaagcg ggaggcggag
301 gaggagcggc ggaggagggc cgccgctgtg atcgaggagg tggagcagag gttctcgacg
361 cccacggcgc tgctgcgcgg catcgcggac gccatggtgg aggagatgga gcgcggcctc
421 cgcgccgacc ctcacgcccc gctcaagatg ctcatcagct acgtcgacaa cctccccacc
481 ggggatgagc acggactgtt ctatgctctc gatcttgggg gcaccaattt ccgtgttata
541 cgtgttcagc ttggaggaag ggaaaagcgt gttgttagtc aacagtacga agaggttgcc
601 attccacctc acctgatggt tgggacttct atggaactgt ttgacttcat tgcggctgag
661 ttggaaagtt ttgtcaagac cgagggagag gatttccact tgccagaggg caggcagaga
721 gagttaggct tcaccttttc tttcccagtg caccaaacat caatatcatc aggcactctt
781 attaagtgga caaagggatt ttccatcaat ggcacggtgg gggaagatgt tgtggctgaa
841 ttgagcaggg ctatggaaag gcaagggctt gatatgaaag ttacagctct tgttaatgac
901 actgtaggca cattggctgg cggaagatat gttgataatg acgttgctgc tgctgtaata
961 ttaggcactg gcacaaacgc agcctacgtg gagcatgcaa atgcaattcc aaaatggact
1021 ggattactac ctagatcagg aaatatggtg attaacatgg aatggggaaa cttcaagtca
1081 gaaaggcttc ctcgttcaga ttacgataat gccttggact ttgaaagttt aaacccaggc
1141 gagcagatat atgaaaagat gatttccggc atgtatcttg gagagattgt gcgcagaatc
1201 ttgcttaagc ttgctcatga tgcttccttg tttggagatg ttgttccaac aaagctggag
1261 cagcgcttta tactgaggac gccggacatg tcagcgatgc atcatgatac ctcacatgat
1321 ctgaaacacc tgggagctaa gctgaaggat atcctggggg tcgctgatac ttccctggaa
1381 gcacgataca tcacccttca tgtctgcgac ctcgttgcag agagaggtgc acgcttagct
1441 gctgctggta tatatggcat tctaaagaag ctgggcaggg acagagtgcc aagtgacggt
1501 agtcaaaagc agaggactgt cattgctctg gatggtggtc tctatgagca ttacaagaag
1561 ttcagaacct gcctagaagc aacgcttgca gacctgcttg gagaggaggc tgcctcatca
1621 gttgttgtca agttggcaaa cgatggctct ggcatcggag ctgcacttct tgcagcatct
1681 cactcccagt atgctagcgt cgagtagtaa caggagctca tgggactgag ctcccagtgt
1741 agcttgtttt cctcccattt tccccgtttc tttccaatgg gagttcgttt ccctcctgcg
1801 attcgcatct ccttttgcta ttctgcagtc acataaacga gtgcctgtgc agcgggatgt
1861 agctagtatg gcgccaaaga gtttgcagtt atcacatgaa caagcatttg caactgcagg
1921 gaagtgaaaa cgggggcttg aatgatgccg ttcttttcct gcaaattatt ttcccccttt
1981 ccctgtaagt ttgtattgtg atgcgatgtc gcaaaccaat cacagcggtt tcgcgtgtag
2041 ccttttgtca ttcagatttc agaataaaga gggggacata atttcacttt tcgtatgtca
2101 gtttgaacta tgtatgtact cttacacact ggtatcaaag ctcaaatgat ctgatc
//