LOCUS AK065640 2191 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013038P06, full insert
sequence.
ACCESSION AK065640
VERSION AK065640.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2191)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2191
/clone="J013038P06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2191
/db_xref="Osa1:LOC_Os02g24080"
/note="(Rice Genome Annotation Project) SNAP25 homologous
protein SNAP30, putative, expressed"
/note="mapping to R02-TIGRv4S1-000603R (Chr.2: short
arm=13943560, long arm=13945750, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 585 a 474 c 529 g 603 t
ORIGIN
1 ggcctactac taattcttcc gatctgtccg cagaggtacg cgcagttatt tctggacctt
61 cttgatagtt aaggtcgatc ttggttactg gaatttataa ggaatcggga tttggtgtgt
121 gtattcttgg caagttggca cgggggatga tctttgccca attcagtttc atttgtgcgc
181 agaaacttgc ttgctgcgga atctgaccca aggagttttc gagatgagcg ggaggagatc
241 gttcttcgca tccaagaagc cgtcgcggag cagcaacccc ttcgactccg actccgacga
301 tggcgggagg gagcagagac cggcgagggc ctcctccgtg cctcctccgg ccgaccagcg
361 gggctccctc ttcggcggcg gggatggctt ctccgcctcg tcggcggcgg cgaggagccg
421 gtacaggaac gacttccgcg acaccggcgg cgtggaggcc cagtcggtgc aggagctgga
481 gggctacgcg gcgtacaagg cggaggagac cactcagcgg gtgcagggct gcgtccgcat
541 cgccgaggag atgagggata ccgcgtccaa gagcctcgtc accatacacc agcagggcca
601 gcagatcacg cgcacgcaca tgatgaccct cgacatcgac caggatctct ccagggtaac
661 taacacaaac taataactaa tactatgtga ttactcagaa gcctgattaa ttctgtttga
721 tcacatagtg gcgtaacaag tccccaccaa aattggcctg tttccttcag aattccatcc
781 ttaataagtc cacgaaaact gaaacaaact tcgtgtcaca cttcagaaat taattgccaa
841 ctccaaattt actgtattat gtggtaataa tggctaaagg gaattcttcg caccttttca
901 gagcgagaag ctgctgggtg atcttggggg tatattttcc aaaaagtgga agccaaaaaa
961 gaatggagaa atcagggggc ctatgctaac tagaggtaat ctccaactct agtcttgaaa
1021 tagtagactg caacaacagt tgctgacagg gaaagcttgt actatgtggt atcacttatc
1081 agttatgttc tctgtgtaac taactggaag gatggaatta cttgtatgca gatgattcct
1141 tcattcggaa gggcagccat ttggaacaaa ggcacaaact gggactatcg gatcacccac
1201 ctcaatcgaa tgcacgccaa ttccattccg agccaacttc agccctccag aaagtggagg
1261 taatgcgcta agacatatat ggtgattgat ttgctaagtg tgtgtattct gattatcttg
1321 ttgtgttgct cagatggaga aggcaaagca ggatgatggc ctatctgatc taagtaacat
1381 attgaccgag ctgaaaggca tggcggttga catgggcact gagattgaca ggtgaatgcc
1441 acatttttca ctttagttca taaaaactaa tacacacttg ttttttctga gattggcgta
1501 ttgttatgtg gaatcccttt tttgtgctct aattccagcg tacttttata gtttgtacta
1561 actgccagtt tatgtttagt ccattcttta aaaattttca cttcttcatg ctgaacgaac
1621 taaaaaggag taaaaagttt ggccaaagta ccttcaaatt caagcggcaa attacttcct
1681 aatatctaat ctggaacact ttgcataatt atatttaaat ctgatgagta ttgttgcttt
1741 aacagtccaa ccaataaaaa tcatcatgtg atatgtcttt ttgtctgttg attggattca
1801 gacaaacaaa ggctttggga gattcagaga aggactacga cgaactgaac ttcaggatca
1861 agggagcaaa cactcgggca cgccgtctgc ttggaaaata aactgcagaa tataatctca
1921 tcacaggaca ggagtccttc catccctttt acccttagtc ttgtggagga taattaattg
1981 ttttgtgggc cattggttct gatgattctg tgcatcagat tttgatcagt acggtgaatg
2041 gttggtcctg gatatgtcag ggtataatgt atctgtatat actgctatag ccattagcca
2101 gtaatgcttt gtgccattgt tttggaattt ggatcgttcg caattgtttc aaatcgcgtt
2161 agcatcaata aaattagcaa tctgccaagc c
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