LOCUS AK065589 1923 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013031K24, full insert
sequence.
ACCESSION AK065589
VERSION AK065589.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1923)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1923
/clone="J013031K24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 329..1714
/db_xref="Osa1:LOC_Os01g10890"
/db_xref="RAP-DB:Os01g0206700"
/note="(RAP Annotation release2) Similar to
Serine/threonine protein kinase (CBL-interacting protein
kinase 20)"
/note="(Rice Genome Annotation Project) CBL-interacting
serine/threonine-protein kinase 15, putative, expressed"
/note="mapping to R01-TIGRv4S1-000343R (Chr.1: short
arm=5806390, long arm=5808312, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG89574.1"
/translation="MEKKASILMNRYELGRMLGQGTFAKVYHARNLASNQSVAIKVID
KEKVLRVGMIDQIKREISIMRLVRHPNIVQLHEVMASKSKIYFAMEYVRGGELFSRVA
RGRLKEDAARKYFQQLIGAVDFCHSRGVYHRDLKPENLLVDENGNLKVSDFGLSAFKE
CQKQDGLLHTTCGTPAYVAPEIINKRGYDGAKADIWSCGVILFVLLAGYLPFHDSNLM
EMYRKISKGDVKFPQWFTTDVRRLLSRLLDPNPNIRITVEKLVEHPWFKKGYKPAVML
SQPNESNNLKDVHTAFSADHKDNEGKAKEPASSLKPVSLNAFDIISLSKGFDLSGLFE
NDKEQKADSRFMTQKPASAIVSKLEQIAETESFKVKKQDGLVKLQGSKEGRKGQLAID
AEIFEVTPSFFVVEVKKSAGDTLEYEKFCNKGLRPSLRDICWDGQSEHPSLAQSSTLT
QSSKSISRHAI"
BASE COUNT 522 a 487 c 473 g 441 t
ORIGIN
1 gacaaacacc tggcctattt ttaggcatcc tcttccatct ccagagaagt gagccccagc
61 ctcatgtcac aagggaagca ctagccacca tagaactctc tctctttttc tccttcctcc
121 taggagggtc ccaaatacac caatcgtgtc ttggattttc ccaaacacag cgcgcactct
181 cgcccttcac ctctcctccc cctcaccctt ccattacatg gatcagggag ggaggaagga
241 ggcctgaagt ggcgcagagt aggcgcttgt aaacaaatcc ccccatttgc ttcttttgca
301 ctgaagaatc cctgaagaat ccagcaggat ggagaagaag gcgtccatcc tcatgaaccg
361 gtatgagctc ggccgcatgc tcgggcaagg caccttcgcc aaggtgtacc atgcacggaa
421 ccttgcatcc aaccagagcg tcgccatcaa ggtcattgac aaggaaaagg tattgcgtgt
481 cggcatgatt gaccagatca agcgagagat ctccatcatg cgcctcgttc gccaccccaa
541 catcgtccag ctgcacgagg tcatggccag caagagcaag atatactttg caatggagta
601 tgtccggggt ggtgagctct tcagcagggt agccaggggg cgactcaagg aggatgctgc
661 gaggaagtac ttccagcagt tgataggggc tgtggacttc tgtcacagcc gcggtgtcta
721 ccaccgagac ctcaagccag agaacctcct cgtcgacgag aatggcaacc tcaaagtgtc
781 ggactttggg ctgagcgcct tcaaggagtg tcagaagcag gacgggctgc tccacacgac
841 gtgtggcaca cctgcatatg ttgcaccaga gataatcaat aagaggggct atgatggagc
901 aaaagcagac atatggtctt gcggtgtcat actctttgtt ctgcttgctg gctacctccc
961 attccatgac tcaaatctaa tggagatgta ccggaagata agcaaaggtg atgtcaagtt
1021 cccacagtgg ttcactactg atgtccgaag gcttctgtcc aggctgcttg atccaaatcc
1081 aaacattagg atcaccgttg agaagctagt tgagcatcca tggttcaaga aggggtacaa
1141 accagcagtg atgctatcac agccaaatga atcaaacaac ctcaaggatg tccatactgc
1201 tttcagtgct gatcacaagg acaatgaagg caaggcaaaa gaaccagcaa gctctttgaa
1261 gccagtgagc ttgaatgcat ttgacatcat ctccctctcc aaaggatttg atctgtcagg
1321 cctgtttgag aacgacaaag agcagaaggc agactcacgg ttcatgacac aaaaaccagc
1381 atcagcaata gtgtcaaagc tagagcagat tgctgagaca gagagcttca aggtgaagaa
1441 gcaggatgga ctggtgaagc tccagggatc caaagaaggg aggaaagggc agctcgcgat
1501 cgatgcagag atctttgaag tgacaccatc cttctttgtt gttgaggtga agaagtctgc
1561 aggggacacg ttggagtacg aaaaattctg taacaagggc ctaagacctt ctctcaggga
1621 catctgctgg gatggtcagt cagagcatcc atcactggca cagtcatcaa ctctgactca
1681 gtcctctaag tcaatctcga gacatgccat ttaagtgcaa cctcataaga gatgcagtaa
1741 caatccattt tcctctctcc ttttcccttt catcaaagtg ctgagcctga gagtattctc
1801 acttgagcat caggcttagg gctctttgat gataattttt gccagttttc cttgtatagt
1861 agcagtttgt ctacatggat ctcctgttct ttcaccaata gaaacaggga gattgacaac
1921 agc
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