LOCUS AK065425 3809 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013011N21, full insert
sequence.
ACCESSION AK065425
VERSION AK065425.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3809)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3809
/clone="J013011N21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 171..3077
/db_xref="Osa1:LOC_Os02g14770"
/db_xref="RAP-DB:Os02g0244700"
/note="(RAP Annotation release2) Similar to
Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase
1) (CP21)"
/note="(Rice Genome Annotation Project)
phosphoenolpyruvate carboxylase 1, putative, expressed"
/note="mapping to R02-TIGRv4S1-000442R (Chr.2: short
arm=8172419, long arm=8184166, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG89517.1"
/translation="MAAAAGKAAMERHQSIDAQLRLLAPGKVSEDDKLVEYDALLVDR
FLDILQDLHGPHLREFVQECYELSAEYENDRDEARLDELGRKLTSLPPGDSIVVSSSF
SHMLNLANLAEEVQIAHRRRIKLKRGDFADEASAPTESDIEETLKRLVTQLGKSREEV
FDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNCLRQLYAKDITADDKQELDEALQR
EIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRIDTALKNIGINERLP
YNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRC
SDELRIRADDLHCSSRKAAKHYIEFWKQIPPNEPYRVILGGVRDKLYYTRERTRHLLT
TGVSEIPEEATFTNVEEFLEPLELCYRSLCACGDKPIADGSLLDFLRQVSTFGLALVK
LDIRQESDRHTDVLDAITTYLGIGSYAEWSEEKRQDWLLSELRGKRPLFGPDLPQTEE
IADVLGTFHVLAELPADCFGAYIISMATAPSDVLAVELLQRECHIKQPLRVVPLFEKL
ADLEAAPAAVARLFSIDWYMNRINGKQEVMIGYSDSGKDAGRLSAAWQMYKAQEELVK
VAKHYGVKLTMFHGRGGTVGRGGGPSHLAILSQPPDTIHGSLRVTVQGEVIEHSFGEE
HLCFRTLQRFTAATLEHGMHPPISPKPEWRALMDEMAVVATKEYRSIVFKEPRFVEYF
RSATPETEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGGAFKH
IMQKDIRNIHTLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAALYDKLLVAGDLQSFGE
QLRNNFEETKQLLLQVAGHKDILEGDPYLKQRLRLRESYITTLNVCQAYTLKRIRDPS
FEVMSQPALSKEFVDSNQPAELVQLNAASEYAPGLEDTLILTMKGIAAGMQNTG"
BASE COUNT 1029 a 894 c 974 g 912 t
ORIGIN
1 gacccacaca cccacactct ctacccccaa acttgccctc caatctatct ccgccgccgc
61 cgccgcctcc gccgcgagag ggcgtcgccg agctgcgcgg gaggctcgcc tcccgcagca
121 tctggccgga ttcgtcgtag tcgaggcagc tgtaagcgag agagagggag atggccgcgg
181 ccgccgggaa ggcggcgatg gagcggcacc agtcgatcga cgcgcagctg cggctgctcg
241 cgccggggaa ggtatccgag gacgacaagc tcgtcgagta cgacgccctc ctcgtcgacc
301 gcttcctcga catcctccag gacctgcacg gccctcacct ccgcgaattc gtgcaggagt
361 gctacgagct gtcggcggag tacgagaacg acagggacga ggcgcggctc gacgagctgg
421 ggaggaagct caccagcctg ccgccggggg actccatcgt cgtctccagc tccttctcgc
481 acatgctcaa cctcgccaac ctcgccgagg aggtgcagat cgcgcaccgc cgccggatca
541 agctcaagcg cggggacttc gccgacgagg cctccgcgcc caccgagtcc gacatcgagg
601 agacgctcaa gcgcctcgtc acccagctcg gcaagtcgag ggaggaggtg ttcgatgcgc
661 tcaagaacca gaccgttgac ctcgtgttca ccgcgcatcc aacgcagtcc gtcaggaggt
721 ccctgctcca gaagcacggg aggatccgga attgcctgag gcagttatat gcgaaagaca
781 tcactgctga tgacaagcag gagcttgatg aggccctgca gagggagatt caagcagctt
841 tcagaactga tgaaatccgc aggactcctc ccactcctca ggatgaaatg cgcgccggga
901 tgagttattt tcatgaaact atatggaagg gtgtaccaaa gttcttgcgc cgcattgata
961 ctgctctgaa aaatattggg attaatgagc gtcttcctta caatgctcct ctcatccagt
1021 tctcatcctg gatgggtggt gaccgtgatg gaaacccaag agttacacca gaggttacaa
1081 gagatgtatg cttgttggca agaatgatgg ctgctaacct gtacttctct cagatagaag
1141 atctgatgtt tgagctctct atgtggcgct gcagtgatga acttcgaatt cgtgcagatg
1201 atttgcattg ctcctccaga aaagctgcaa agcactatat agaattctgg aagcaaattc
1261 ctccaaatga gccttatcgt gtcatacttg gtggtgtcag ggataaattg tactatacgc
1321 gtgaacgtac tcgccatcta ttgacaactg gagtttctga aattccagag gaggcaacgt
1381 ttactaatgt tgaagagttt ctggagccgc ttgagctgtg ctacagatca ttatgtgctt
1441 gtggtgacaa acctatagct gatggaagcc ttcttgattt cttgcgtcaa gtatcaactt
1501 ttgggctggc tcttgtaaaa cttgacataa ggcaggagtc tgatcgacac actgatgtcc
1561 ttgatgccat aactacatat cttgggattg gatcttacgc tgaatggtct gaggagaaac
1621 gccaggattg gcttttgtcc gaactaaggg gcaaacgtcc tttgtttggt cctgatcttc
1681 ctcagactga agaaattgct gatgttttag gaacatttca cgtccttgct gagctcccgg
1741 cagattgttt tggtgcttac atcatctcaa tggcaactgc accatctgat gtgcttgctg
1801 tggagcttct acagcgggag tgccatataa aacagcctct gcgagttgtt cccctatttg
1861 agaaacttgc agatcttgaa gcagctccag cagcggtggc acgactattt tcaatagact
1921 ggtacatgaa taggattaat ggcaagcagg aggtcatgat tggatactca gactctggca
1981 aggatgctgg tcgtctttct gcagcatggc aaatgtacaa agcacaagag gagcttgtca
2041 aggtggcaaa gcattatggt gtaaagttga caatgttcca tggaagaggt ggaacagttg
2101 gcagaggagg tggtcccagt catcttgcca tattatctca accaccagac acgatacatg
2161 gatcacttcg tgtaacagta cagggcgagg ttattgaaca ctcgtttgga gaggaacact
2221 tgtgctttag aactctgcag cgctttactg cagctactct tgagcatgga atgcatcctc
2281 caatttcccc caaaccagaa tggcgtgctc taatggatga gatggctgtt gtggcaacaa
2341 aggaatatcg atcaatcgtc ttcaaggagc cacggtttgt tgaatacttc cgatcggcaa
2401 cacctgagac agaatatggc aggatgaaca ttggtagccg accatcaaag agaaagccta
2461 gtggtggcat tgaatcgctc cgtgcaattc cttggatttt tgcttggaca caaactaggt
2521 ttcatcttcc tgtatggctt ggatttggtg gagcgttcaa acatataatg cagaaggata
2581 tcaggaacat ccatacactg aaagaaatgt acaatgagtg gccattcttc agggtcacct
2641 tggacttgct tgagatggtt ttcgccaagg gagatccagg aattgctgct ttatatgaca
2701 aattgcttgt ggcaggtgat ctgcaatcct ttggagagca gctgagaaac aactttgaag
2761 agacaaaaca gctactcctt caggttgccg gtcacaagga tattctggaa ggggatcctt
2821 acctgaagca gcgtctgcgg ctgcgtgagt cgtacatcac taccttgaac gtttgccaag
2881 cctacaccct gaagcggata agggacccta gcttcgaggt gatgtcgcag ccggccttgt
2941 cgaaggagtt cgtcgacagc aaccagcctg ccgagctggt ccaactgaac gctgcgagcg
3001 agtacgcacc tggcctggag gacaccctca tcctgacgat gaagggcatt gctgccggca
3061 tgcagaacac aggctagatt gtccacaaga atgcttccag caggtgcaat caatcaatca
3121 tcaataactc cttccatgat gagatggtga atatgtttaa ctacccgatc caaaataaaa
3181 tatggaccaa tcattctacg aagcttgatt ctgaacgctt cgaatttgca tcagtggtga
3241 cagcggctgt gtttgcatct ttaaacgaca gactaaaagc attgtgcacc gcaagatgca
3301 gacttgacat gtgcttatag cagaagtatt acatggagca catctcaggg tcaggtatat
3361 tgcaatctca aaaatcagga gatacacaat cagatggata tgaaatgaga agcaaaattg
3421 tgtctgaaga aatgagaagc aagaatacag ttaaagggtc tgatgggtta cagtctgaaa
3481 aatcagggga tatgcaatcg gagagatatg aaagtgacaa aattttgtcc agagaaataa
3541 gaagcaagaa aacattgaaa ggtcagttat catgctcacc tagcattatg caccataaaa
3601 tgatcttggc agacaatata atctagcata aaattatata caacaaatta gagattgtag
3661 cgttgataaa ttttcaagga ctatatatct atagttagtt acagtgagaa ataacaaaag
3721 ttacatatgt aactacaata catatagact gtaactgggc taaaactgca agcatgcttg
3781 aatttcttca aaaaataaag aatttcttc
//