LOCUS AK065378 1991 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013020B09, full insert
sequence.
ACCESSION AK065378
VERSION AK065378.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1991)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1991
/clone="J013020B09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 179..1699
/db_xref="Osa1:LOC_Os10g35640"
/note="(Rice Genome Annotation Project) rf1 protein,
mitochondrial precursor, putative, expressed"
/note="mapping to R10-TIGRv4S1-000551F (Chr.10: short
arm=18727280, long arm=18729348, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG89496.1"
/translation="MARRVAARARARAGGVPRSEGTIQDRARVGSGGAEDALDVFDEL
LRRGIGAPIRSLNGALADVARDNPAAAVSRFNRMARAGASMVTPTVHTYGILIGCCCS
AGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPN
VFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAY
ATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVH
GFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGL
KPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEA
MLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIML
QGLFRTGRTATAKEFYVQIIKSGKKDLIEQGLLEELDDLFLSMEDNDCSTVSTPAC"
BASE COUNT 500 a 485 c 503 g 503 t
ORIGIN
1 ggtcgtcttc ttcccgcgcc tttcgcgaag ccaactgctc gaacggacgc acccgtgcag
61 ccgcgctcgt cggccgtcgc cgtcgaggcc gcccctccgc cgccgccagc agctgatccg
121 ttcgccattc cttcgcgcgc tggtttccac ctttccttgc ccgtccgtca ggccggacat
181 ggcacgccgc gtcgctgccc gcgcccgcgc ccgcgccggc ggcgtcccgc gctcggaggg
241 tacgatccaa gaccgagcac gcgttgggag cggtggcgcc gaggacgcac tcgacgtgtt
301 cgacgaattg ctccggcgag gcatcggcgc tccgatccgc agcttgaacg gcgctctcgc
361 cgacgtcgcg cgcgacaacc ccgcggccgc tgtgtcccgc ttcaaccgca tggcacgagc
421 tggtgccagc atggtaactc ccaccgtgca cacctatggc atcctcatcg gctgctgctg
481 cagtgcgggc cgcttagacc tcggtttcgc ggccttgggc catgtcgtta agaagggatt
541 cagagtggaa cccatcatct ttaatcctct gctcaagggc ctctgtgcag acaagaggac
601 ggacgacgca atggacatag tgctccgtgg aatgaccgag ctcagctgcg tgccaaatgt
661 cttctcccac accattattc tcaagggact ctgtcatgag aacagaagcc aagaagctct
721 cgagctgctc cacatgatgg ctgatgatgg aggaggctgc ttacctaatg ttgtgtcata
781 cagcaccgtc atcgatggcc tcttgaaagg aggggatccg gacaaagcct acgctacata
841 ccgtgaaatg cttgaccgga ggattttgcc aaatgttgtg atttacagct ccattattgc
901 tgccctatgc aagggtcaag caatggacaa ggccatggag gtacacgata ggatggttaa
961 gaatggagtt acacccaatt gcttcacgta tactagtctt gtgcatggat tttgctcttc
1021 agggcagttg acagaggcta ttaaatttct agaaaagatg tgcagcaatg gtgttgaacc
1081 aaatgttgtt acttatagct cgtttatgga ctatctctgc aagaacggaa gatgcacaga
1141 agctagaaag atttttgatt ctatggtcaa gaggggccta aagcctgata ttactaccta
1201 cagtagctta cttcatgggt atgctatcga aggagctctt gttgagatgc atggtctctt
1261 tgatttgatg gtacaaagtg atatgcaacc cgatcattat gtcttcaaca cactaatata
1321 tgcatccgcc aagcaaggaa aagtagatga ggccatgctt gtatttagca aaatgaggca
1381 gcaaggattg aaacctaatt gtgttacgta tagcactttg attaatggct actgtaaaat
1441 tactaggatg gagaatgctt tagcactttt ccaagagatg gtgagcaatg gtgttagtcc
1501 taattttatc acatataaca taatgctgca aggtttattt cgtacaggaa gaactgctac
1561 tgcaaaagaa ttctatgtac agattatcaa aagtggcaaa aaagatctta tagaacaggg
1621 gttgctagaa gaattggatg atctatttct ttcaatggag gacaatgact gtagtactgt
1681 gtcgactcct gcatgctaaa ttgcagagtt acaaagttac ttcaaaaagg ggaagtaggc
1741 actaggcagt gctggggttt acatgtccaa aattgatcaa aataacctcc ccgttgaagc
1801 ttcgactgtt gatttgctga ttttgctgat ttcaagcagg aaattcaatc aaacatacgg
1861 aatttctccc tgaaaagttt tgctctgaag tgaaatccat cctgtttgaa atggcctaca
1921 gttatgcagt tgtaactggc tattgttggc cttctcactg aattagtaat acaaacaaga
1981 aattctggac c
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