LOCUS AK065375 2969 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013008L21, full insert
sequence.
ACCESSION AK065375
VERSION AK065375.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2969)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2969
/clone="J013008L21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2969
/db_xref="Osa1:LOC_Os01g42710"
/db_xref="RAP-DB:Os01g0612700"
/note="(RAP Annotation release2) Zinc finger, LSD1-type
domain containing protein"
/note="(Rice Genome Annotation Project) LSD1 zinc finger
family protein, expressed"
/note="mapping to R01-TIGRv4S1-001002F (Chr.1: short
arm=24621136, long arm=24626348, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 778 a 710 c 747 g 734 t
ORIGIN
1 cagcagccag tgtgtctcca gtattggaca gtggggatcc agatgcagct gaggttgatg
61 tagtagtagg gatgcaagaa caagctgctg gttcagcgct tgccatgttg gtaacttacg
121 gggagactga tacctcagca gtcagtgtat ctccagtact ggagagtggg gagccagatg
181 cagcccagat tgatgtagta gcagggatgc aagaagaagc tcctggttca atgttggcca
241 tggaggtaac gtacagggag gttgatgctg caacagtcag tgtgtctccg gtattggaga
301 gtgtggagcc agatgcagcc aagatcgatg tagtagcaag gatgcaagaa gaagctcctg
361 gttcaaagct tgccatggag gtaatgtacg gggagactgg taccgcagca gtcagtgtgc
421 ctctggtatt ggagagtagg gaagaggggt cacttcaaga atcaatgcag agaccatctt
481 ctcccacaat gaacattgag caagagtcaa tgcagagacc attttctccc acaattggca
541 ctgagacaag ttcgccagag atggctcctg ctggatctga gaactgtaaa gtatcatggt
601 tgccgttgcc ccctcctaca ccacttggcg aatcaatgcc ctccttgcca gtcgcagctg
661 cccccaaggt tttattggtg atgccggagg aagcggttga gtcagtccct tcatcggaag
721 ctctggatgt tgaaaaacct gcctccatca cacaggctga gcccagctca cctaatacgc
781 caccgccagg atttgagaat tttaagtcgt catggttgcc gctacccacg actcctcccc
841 cagttgaaac cactgatgtc ttgccagatg tggtggttac caaggcagtg gaagcaccca
901 ttgaggaagt gtctaggcca ttgccagctt tggaggtgac aaacatggag tcagacactg
961 tcctcagtat cttgcccaca acagtcttgc caacagaagg gactgaggga ctactgcaac
1021 aaccactatt gagaccccct tctccagtgg tgcaatctga accatgtttg caaaatgaga
1081 tggcacctcc agggttcgag aattttaagt catcatctga accatgttca gcagaggaga
1141 tagcacctcc agggtccgat aatttcaaat catcatctga accatgttta ccagaggaga
1201 tggcacctcc agggtttgaa aattttaagt catcatctga accatgttca caagaggaga
1261 tggcacctcc agggtttgag aattttaagt catcatggcc accacttccc actctgcccc
1321 aaactgtacc agatgcagcc gcagcggatg ctttggcagc aacagtggaa gaagcagctg
1381 ggccaccacc tgcattggag ttggaggcaa tggatgtgga catggatgcc atacatccac
1441 caccgctgcc ttttgacagt ggagtggagt cattgcaaaa gccactgcca agagcacctt
1501 ctcccataat gcaagaagcg ccctgttcac cagatagggc accgccaggg tttgaaacct
1561 ataagtcatc acagttactg ctaccatctc catctctggc acaaaccaca aatgtgcgac
1621 aagatcaatc ggtaactgaa cctgtgtctg tgatagagga agcccctcag ctactgcact
1681 cagtggaggt aatgggtgta catatggatg cagtacctcc attgctacca tcatctgaaa
1741 gtggagcaga tgggctatct ccgcagcaat tcgcgcaacc tcctcctgca gaaaaggata
1801 caacaacctg tttgccagat atggtgcatt caggatgtga caattcagag ccctctcagc
1861 ttctgtcact gcctgctgtt atttctccag ttcagacccc agatggcttg gctgatgttc
1921 ctgccattga cagggttgca gtggcattgg aagaatcgcc tcagcgaccg cttgtatcag
1981 gggaaatgga agctggcaca gtgcccattc ggtcatcacc actgaagaat atttctgagg
2041 ggtcactgcc acaactagaa tcagagtcac attctcctac atcacaggct gcagatagct
2101 tactagatgc atctgactca aagtctgtgg ctgtggcctc agaggagatg tctcagctac
2161 cacttgcatc gcaggcaact actacagacc ttgtcagtac aactgcaatg cagccacaat
2221 ctgagggtat agtggatgag tcattgcagc ctcagcatcc accctcttct accgcacatg
2281 attcaccttg tttacaggac tctgtgccat tggtgccacc accaccttcc ccttacctaa
2341 ataaagaagt aggtcaaatg gtatgtggaa gctgccgtat tcttcttgct tattttagag
2401 gtgctggtta tgttcactgt acttgttgcc agacaatgaa ctatgtattg gaagctcatg
2461 aagttggtaa ggtgcattgt ggacactgtg cgacattatt gatgtatcct tttggtgcgc
2521 ctgctgttaa gtgctcgttg tgcctctttg tcactgaaat tggagagcgg aatgttcgcc
2581 gtcggttatc aatcgagcaa cccacaagaa ctaactcatc agggctagct gaagcctgat
2641 cagttctggt cccatgtacc catcggattc caagaaagct tcaaatgcta atgtggatga
2701 aaggaacaga atgttcgccc ttcgtcatga ggtgtgggca tgaaagttca agatggtatg
2761 gacaagccaa agtgtacaaa gatagcgttt tttttttcat tgatgtagac aggaaaggtg
2821 accttgttag tacgactaga tctcctttga aagggaaaat aaaagaaaaa tagttcgatt
2881 caatctggag gtgatatgcg tatgtcatat gaatgataac agagtagttt tcagatggtt
2941 ctttcgcggt gaccatcatg ttgcccccc
//