LOCUS AK065331 3861 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013000M22, full insert
sequence.
ACCESSION AK065331
VERSION AK065331.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3861)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3861
/clone="J013000M22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3861
/db_xref="Osa1:LOC_Os04g34610"
/db_xref="RAP-DB:Os04g0423600"
/note="(RAP Annotation release2) Nuclear protein SET
domain containing protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R04-TIGRv4S1-000466R (Chr.4: short
arm=20753690, long arm=20761540, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 1050 a 869 c 936 g 1006 t
ORIGIN
1 ggtagggccc agccacccag cccaggcaag ccaaagcaca cccccctctc gtctcgtcgt
61 ctccgttgcc ggcacgcacg ccgccgccgc ctcgctcccc tctcttctgg cgcggttgcg
121 gtgccgccgc cccgtcctac gaccctgctg cggggacgcg gcttcaagga ggacctgaca
181 aaatggcaat ggggatgaga gcccgggaat ctgtgaacat gtcggaggac ctaactcagg
241 ccattgcgcc ttatgctact gccctgcacg atgcgtcgct ccagtcccac tgttcgtcat
301 gcttccaccg cataccggct caatcccccc acgacatgtc ttgcacgatg tgcggttctg
361 ttcgatattg ctgctcggac tgcttgatct cggactgtga agtgcattca tcttctggtg
421 aatgttgctt ctttgtgaaa catctcaggg aagcctcccc atccactctt accgaagaaa
481 cgagcgatat ccgtgctgct ctccgccttc tctattcgct tgagacgcgt ggtcttgttt
541 catctgattc ggtcagcagc tccaatagga tcggcgggct ttctgcaagt ggtattaggg
601 aggttctgga ggagggtggg gagattgccg agggggtgct ggaggggagt ttgttgatgt
661 tgtctgccag aaaatcgagg atgaagaact atgttggtct ctccaatggc ttgacgatag
721 agaaggtggc attgtgggca gtgatgacaa atagtgttga ggtgcagatt agcgaagagc
781 agtctctggg gattgctgtt tatggcccta gtttctcatg gttcaatcat agttgctgtc
841 ccagtgcttc ttaccgattt gtattggttc cacagaatga agggtgtact tcaaacaaac
901 cagaatcatg tgtagttcct gttagcaaag gagctgcgcc agatgcgtgg catgcttggc
961 agaatgaaga agctggtttt gctcatgctc aatgtaaata tggtccacga gttgttgttc
1021 gctgcacaaa gccaatcaac aagggagatg aagttttcat aacatacatt gatcttcttc
1081 agacaaggga agcaaggctt tcagatctgt ggtcaaagta taaattcatt tgttcttgcg
1141 agctttgtac tgcactacca aaaccatatg tggatcttat tctgaattgt gatgctagga
1201 acttgaaatc gccacataat gctgttacag acccagcaat tgaggatttg gacaataact
1261 tacaacaggc aatatctgaa tactcattcc ttgatgactc taaagcttgc tgtgatgtaa
1321 ttgaaagcat gctttcagaa aacttgatga atgatttgca gcaagaggaa ctttcaccaa
1381 ggaaatacat actacacccc ctacaccata tcagtgtcag cagtttcatg atacttgcct
1441 ctgcataccg gtgcagtgcc ttcaaatcaa gcactgataa tttgcatgga gaaaattgtg
1501 atttcatttt cagaatgacc aaagctgcag cagcttattc aatagttctt gcaggggcta
1561 cacatcactt gtttttatct gaatgttcct ttgtgaccct tctgtcgcat tttttgctaa
1621 gcactggaca gtccatatta gattttgctg aatgtattaa gggagaaaca aggaaaaaca
1681 tgcctgaagc tatcttcagc tttgcttcat gttcaacaaa ttcggcaaaa catgattctg
1741 tgcggtacaa tcaattcaga tcaacttgtg agaagtttgg caagcccttg ttatctttat
1801 cgttgcagtg ctggccattt ttagcccaag gcttaccctg cctggaaaag ataaagaacc
1861 ccatagattt cagttggctt ggtccagcaa tatttcaggc tttccagctt tctgaggaag
1921 attctttcaa cctttctggt aaacatgcgc cagcaactct catcgagcaa cagaaagagt
1981 gcattctgag cttagctgtt tgctgcatca cctacagcaa ataccttgca agtatatgct
2041 atggtccaga acattatttg gcaaatcgtg ctaaagatct gcttgaatgt atcaatcatg
2101 tacaatgatc tctctgtgat atatctctgg agctgatgtt tgatgtgctc tattgtcttt
2161 atcaaggcag aagatgagtt taaagttaca acacctatcc cataaaggaa tcaccgaggt
2221 attggaagaa tcatcatcag attgggctgt gaagatcttc gatttaaata atggtgcaaa
2281 agtttactca agaataaagg ctgagatgct cttcaagtga taacaataat tgttttggac
2341 ttggaagaca atgtgacagc tgcttgctat gcataaaaca gagtgtctta ttcaatataa
2401 ttggacgaaa ttaccctctc tgaagttatt ggaagcgacg ttgacttgta acagcttcag
2461 atccttacaa atggacagca atcatggatt tctgttgagt catgtggaat attatcttca
2521 ttttgccaag tgcgtaagca aaatgaatgg ttatcagttg cagttcattc tagtatccat
2581 atgaccacag tttgatgcag ctgcaagcct gcagcaatta ttttgtgttt gttagttgct
2641 cattcctaca tcaattaact tcttccgaaa tggcagatga gtatgatcgc agcagctaca
2701 gaaggtctgg tgctgatgac gaggaaggtg gctacaacaa gaccaacact ggagattatg
2761 gccgcagcgg tgacaactac ggtcgtgaca ctggcctctt caacgagtcc ggcaacgacg
2821 acaatgagag tggctacaag aacaccaaca ctgatgaata tggcagcact ggtagctaca
2881 acaagtccaa caccgacgac ttaactggcg gcttcaacaa atccggcaca gatgactaca
2941 gtggtggcgg cggctacaac aaatctggcg ccgacgacta cagcagcagc ggtggctaca
3001 gcaaatccgg cactgacaac tacagcggca gcggcggcta caacaaatcc ggcaacaatg
3061 actacagtgg cagtggtggt ggctacaaca agtccagcgc tggcgactat ggcagcgagt
3121 acaaggactc cagcaccggc gactatggtc gtggtgacga atacaagaaa tcaagctcag
3181 acgactatga tggtggctac aagaagtcaa gcagcaacga tgatggctat ggcggaagcg
3241 gctacagcaa gccgagcacc ggcgactacg acagtggtaa gaacgcctcc aacactgatg
3301 gatatggtgg cagtggctac aacaaatcaa gcacagacaa ctctgagagt ggctacaaca
3361 agtccggcac cggtgaatat ggcagcggcg gcggctacaa caaatcaagc acggacaact
3421 atgagagcgg ctacaacaag tccggcaccg gcgactatgg cagcggtggt ggctacgaca
3481 agtctgacgc cggtgactac actggtggct acaacaagtc gagcactgat gagtacgcaa
3541 ccggaagagg caagaccagt tctgacgact actagataat tatcgcttat caggaaagcg
3601 aatcagggta ctcttgatgc tgaagtacta aatatgctcg aatacagttg gtccttgcta
3661 aaaaggattt cgtatgtatt ccctcttatt tacaggatgg gttgatcagt ttgtctctga
3721 tatgcaaggt tgatcacaca tctcagagga tgtgtgatgt gcgtaatatg ctctgtatgt
3781 gtatgtacct gaacgaaaat gtaatactac tctgctatgt ttgcacatga ataaaacgtg
3841 atatatgcag tagtatcaag c
//