LOCUS AK065197 1791 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013002E17, full insert
sequence.
ACCESSION AK065197
VERSION AK065197.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1791)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1791
/clone="J013002E17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1791
/db_xref="Osa1:LOC_Os06g03640"
/db_xref="RAP-DB:Os06g0126500"
/note="(RAP Annotation release2) Ubiquitin domain
containing protein"
/note="(Rice Genome Annotation Project) protein binding
protein, putative, expressed"
/note="mapping to R06-TIGRv4S1-000074F (Chr.6: short
arm=1413221, long arm=1415299, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 383 a 500 c 531 g 377 t
ORIGIN
1 ggttccctca tcaacctcac caccattatt ttcttctctc ctcttctctt cttcctcctc
61 tcctctcctc tcctcgctct ccatccatct cgtcttcttc ttcctcctcc tcagcttcga
121 gatttcagct tctccaaacc cccattcttc ccgccacaag ctctgctctg tgctttgctc
181 gctcgccttt cccgccattg gtgtgcttcg ctttcttggc ttcaaagatc cgacgagctc
241 tgtgatagct ggggagaaga agaggaggag aggaggatgc tgggagcgag ccctaaggcc
301 aagaaaggcg cgacggtgaa gttcgggtcg atgaagaatc ctcctcctcc cccggtggtt
361 ggcgccgccg ccggagcagc ggcggcggcg gcgggtggga aggtgccggc ggaggaggtg
421 tgggaggtgc ggccaggcgg gatgctggtg cataagaggg gcggcggcgc cgacgaggag
481 cccgtcaact tgaagccggt gcccaccatc cgcgtcaagg tcaagcacgc cggcatcacc
541 cacgagatct acatcaactc gcaggcgtcc ttcggggagc tgaagaagat ggtggcggcg
601 cgaacggggc tgcatccgga cgaccagaag gtgatgtaca aggacaagga gagggactcc
661 aaggcgttcc tggacatggc cggcgtcaag gacaggtcca agctggtggt cgtcgaggac
721 cccgaggcac gcgcccgccg cctcatcgag gagcgccgca atggccacct cgagaaggcc
781 gccaaggccg tcgccgccgt caccgccgag gtcgacaagc tcgcccccaa ggtggcggcg
841 ctggacgcgt cggtgaggaa gggggagaag gtggcggaga acgacgtggt gcaggtgacc
901 gagctgctca tgaacgagct gctcaagctc gacgcggtgg tcgccgacgg cgacgtcaag
961 gcgcagaggc ggctacaggt gaagcgcgtg cagaagtacg tggagacgct cgacgccgtc
1021 atggccaaga acgccgccat cgtgcgcaag tccggcgaga agctcacctc caaacaacac
1081 catcacccgc cggcgaggca gcagcagcag caagctcacc aacaccatca gcagccggcg
1141 gcggggcaga cgcggtggga gatgttcgac ctgctgtcct cgctgccgtc gacgtcgtcg
1201 gcctcctcaa cgaccaccgt cagctcaacg gcctcctccg gcgcgccgcc gccgctgccg
1261 ccgccggcga accggctcga ctggatgcta ttctgagcac acacatcaca gaatcggcag
1321 atgcaatggt ggtgcttggt tggcaagaat tgcacccatg tccggaaaat ccgaggtgtc
1381 ctgtccctga tgagatgatg atgaagatga tgattgaatt gccctggatt atttgctgct
1441 gctctagcaa tttggttggc cacattacat ggtactacta ccacttctag atgagttcag
1501 ttcatcatgt gagagtaatt tttttttaat tttgtttttt ctttctttct ttctttcttc
1561 ttcttcttca ccatcaaatg tttgatattc ttttgtgtgc atatattctg agaaagagag
1621 agagagagag agagagagag gaaattaggg gggaagagag aaattgaagt gtattcagat
1681 tgggaataag tcaaaaaggg ttattattgt tctccaattg gcgtttgaag aaaaggcaaa
1741 gaaaatgttg tacccatatg gatacagata ccaatacata ccgttcttga t
//