LOCUS AK065163 1312 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013002C07, full insert sequence. ACCESSION AK065163 VERSION AK065163.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1312) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1312 /clone="J013002C07" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 305..958 /db_xref="Osa1:LOC_Os12g41880" /db_xref="RAP-DB:Os12g0613000" /note="(RAP Annotation release2) Similar to NF-YA subunit" /note="(Rice Genome Annotation Project) nuclear transcription factor Y subunit A-7, putative, expressed" /note="mapping to R12-TIGRv4S1-000803R (Chr.12: short arm=25919868, long arm=25923724, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG89393.1" /translation="MTSVVHDVSGNHGADERQKQQRQGEPEDQQEASVTSTDSHTMVA TPSTDYATPYAHHDMAHAMGQIAYANIDPYYGSLYAAYGGQPMMHPPLVGMHPAGLPL PTDAIEEPVYVNAKQYNAILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGA GGRFLNSKSDDKEEHSDSSSRDKQDGVAPRDSGQPSTSPSSKGASSAKQNKKSKTSN" BASE COUNT 347 a 322 c 303 g 340 t ORIGIN 1 gcttctcatc tcatctccct ctcctctcct ctcgccgtcg ccgtcgccgt cgccgccgct 61 cgccgccggc ggggatagag ttcgccggga tcgcctcgcc gggagagttc cctcaccatc 121 ccgcacctcc gctcgcctgg cctcttcctc ccggaagtgt ggtgtgctgc aagctcctgt 181 ctctcctaca aggtttcaaa accaaaatat gcctgaagca cacggaaagc tggggtgatt 241 aacgtctgtt tcttttgact acaatcatcc tgattctgct tctgtctgca aaaacaacca 301 agccatgacg tctgtagttc atgatgtttc aggcaaccat ggagctgatg agcggcaaaa 361 acagcaaagg caaggtgaac ctgaggacca gcaagaagcc tcagttacta gtacagatag 421 ccatacaatg gtagcaacac cttcaacaga ttatgcgaca ccctatgccc atcacgatat 481 ggcccatgca atgggccaaa ttgcttacgc aaatattgat ccatattacg gaagccttta 541 tgcagcttat ggtggacagc ctatgatgca tccaccattg gtcgggatgc atccagctgg 601 actaccactg cctaccgatg caattgaaga gcctgtctat gttaatgcaa aacagtacaa 661 tgccatatta aggcgtcgac aatctcgagc caaagctgag tctgaaaaga agcttgtcaa 721 gggccgtaag ccatatctcc atgagtcacg gcatcaacat gccctgaaaa gggctagggg 781 agctggaggc cgatttctta attcaaaatc ggatgacaag gaagagcatt ctgattccag 841 ttccagagat aaacaggatg gagttgcacc ccgtgatagt ggccaaccgt ctacctctcc 901 gtcttcaaag ggtgcatcat cagctaaaca aaataagaag tcaaaaacca gtaactaaac 961 gggatttaaa cacctggtgt gaaacatgga aacagttttg tacagtacat gctagcgatc 1021 gacaaagaat ggtgtcattg ggtgttgtag gataatgctc catagagaat atatagacag 1081 ggcaacagat tttgcagcct ttggttcggt ctgctcagtt tctttacctt cttgtacaat 1141 gagtagtttt cgtcagttgt gctttgtcat ggggatagct gaatttcttc aggaagtctt 1201 gtagttttaa agagttcatt agcttgccaa ttgtttgctt tggattggat tggtctctta 1261 ctgcctttgc atcatcatct gcagtgcaca gaataaaaca ttggctatgt gt //