LOCUS       AK065163                1312 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J013002C07, full insert
            sequence.
ACCESSION   AK065163
VERSION     AK065163.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1312)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1312
                     /clone="J013002C07"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             305..958
                     /db_xref="Osa1:LOC_Os12g41880"
                     /db_xref="RAP-DB:Os12g0613000"
                     /note="(RAP Annotation release2) Similar to NF-YA subunit"
                     /note="(Rice Genome Annotation Project) nuclear
                     transcription factor Y subunit A-7, putative, expressed"
                     /note="mapping to R12-TIGRv4S1-000803R (Chr.12: short
                     arm=25919868, long arm=25923724, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG89393.1"
                     /translation="MTSVVHDVSGNHGADERQKQQRQGEPEDQQEASVTSTDSHTMVA
                     TPSTDYATPYAHHDMAHAMGQIAYANIDPYYGSLYAAYGGQPMMHPPLVGMHPAGLPL
                     PTDAIEEPVYVNAKQYNAILRRRQSRAKAESEKKLVKGRKPYLHESRHQHALKRARGA
                     GGRFLNSKSDDKEEHSDSSSRDKQDGVAPRDSGQPSTSPSSKGASSAKQNKKSKTSN"
BASE COUNT          347 a          322 c          303 g          340 t
ORIGIN      
        1 gcttctcatc tcatctccct ctcctctcct ctcgccgtcg ccgtcgccgt cgccgccgct
       61 cgccgccggc ggggatagag ttcgccggga tcgcctcgcc gggagagttc cctcaccatc
      121 ccgcacctcc gctcgcctgg cctcttcctc ccggaagtgt ggtgtgctgc aagctcctgt
      181 ctctcctaca aggtttcaaa accaaaatat gcctgaagca cacggaaagc tggggtgatt
      241 aacgtctgtt tcttttgact acaatcatcc tgattctgct tctgtctgca aaaacaacca
      301 agccatgacg tctgtagttc atgatgtttc aggcaaccat ggagctgatg agcggcaaaa
      361 acagcaaagg caaggtgaac ctgaggacca gcaagaagcc tcagttacta gtacagatag
      421 ccatacaatg gtagcaacac cttcaacaga ttatgcgaca ccctatgccc atcacgatat
      481 ggcccatgca atgggccaaa ttgcttacgc aaatattgat ccatattacg gaagccttta
      541 tgcagcttat ggtggacagc ctatgatgca tccaccattg gtcgggatgc atccagctgg
      601 actaccactg cctaccgatg caattgaaga gcctgtctat gttaatgcaa aacagtacaa
      661 tgccatatta aggcgtcgac aatctcgagc caaagctgag tctgaaaaga agcttgtcaa
      721 gggccgtaag ccatatctcc atgagtcacg gcatcaacat gccctgaaaa gggctagggg
      781 agctggaggc cgatttctta attcaaaatc ggatgacaag gaagagcatt ctgattccag
      841 ttccagagat aaacaggatg gagttgcacc ccgtgatagt ggccaaccgt ctacctctcc
      901 gtcttcaaag ggtgcatcat cagctaaaca aaataagaag tcaaaaacca gtaactaaac
      961 gggatttaaa cacctggtgt gaaacatgga aacagttttg tacagtacat gctagcgatc
     1021 gacaaagaat ggtgtcattg ggtgttgtag gataatgctc catagagaat atatagacag
     1081 ggcaacagat tttgcagcct ttggttcggt ctgctcagtt tctttacctt cttgtacaat
     1141 gagtagtttt cgtcagttgt gctttgtcat ggggatagct gaatttcttc aggaagtctt
     1201 gtagttttaa agagttcatt agcttgccaa ttgtttgctt tggattggat tggtctctta
     1261 ctgcctttgc atcatcatct gcagtgcaca gaataaaaca ttggctatgt gt
//