LOCUS AK065078 2764 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013001K23, full insert
sequence.
ACCESSION AK065078
VERSION AK065078.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2764)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2764
/clone="J013001K23"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 617..2518
/db_xref="Osa1:LOC_Os09g30400"
/db_xref="RAP-DB:Os09g0481700"
/note="(RAP Annotation release2) SUSIBA2-like (WRKY
transcription factor 80)"
/note="(Rice Genome Annotation Project) OsWRKY80 -
Superfamily of rice TFs having WRKY and zinc finger
domains, expressed"
/note="mapping to R09-TIGRv4S1-000546R (Chr.9: short
arm=18495974, long arm=18500216, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG89349.1"
/translation="MASSSDHGSLMEDWMPPPTPSPRTLMSSFLNEDFVSGSFSNIFS
DHESNKPQDQFERNRELVDLSKEVPSQFARPAFQRDASLDHSLVSPTQRSNSHGGLAE
RRAARAGFSVPKIDTSRGGSSTVIRSPVAIPPGLSPTTLLESPVFLYNAMAQPSPTTG
TLPFLMASNAKSTIPSATKMDEDCTFGNDTFSFQPHVGSRRPNFSAAEKGPNACHQNQ
SLSNIHQRESSLQSSFTAVKDITDEKNIKTKTSDSMFGDNHSSDEQDDETNQNGENSM
PPPNHRSGVPLSHTNDPEVNVLENRGSQTCHNSASLWDNAKNDCLQDVQSEVIETRTA
ACLPVSTNCDTSIMESQDAVDVSSTLSNEEDDRATHGTASIECNGDGDETDSKRRKLD
ALTAATAAITTTSNIDMGAAASRGVREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGN
PNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHEVPAARNSGHGSSGSGNA
PSAPQSNGSQRRQEQGQASFSQFGGAAPFSSFVLPPRNQFGPSASNFPFGMVPPGMAI
PMPSLGSLAPAKMAGHPSTMQGYQGLMIPEGEMKTEPMSQLGFPAVNQSSSSFQQMMN
RPPSFGPQM"
BASE COUNT 742 a 646 c 666 g 710 t
ORIGIN
1 gagtcttctc ttcaccttct tctcatcctc ttcttctcct cctcggtcaa accgcctttt
61 cttctctccc ctatcctccg ctccgaggga gaaaaaaaaa caaagaaaga aagaaagaaa
121 gaaaaagagt actagtagca cccggagagt ggaggaaagg gagtaggcgg agccaaatct
181 cgtttctctt tagttgttgt tagtaccctt agtggaagaa tctctcccct tttcttgtgt
241 ttcttgggtt ttgaagtttt ttgttgttgg gaggtatgag gaatgaaggc ctaacctgag
301 gcaagatctt cgttttcctt catttgtggg ggtgtttgtt ggtggaaacg gatcaagaaa
361 agccggaatt tcggttctga aatcgtcggt tttgatatcg gtttctctct gttgattgga
421 gagagaggga gagagcaaac gcatgatctg tgtctgattc tgacgggcct tgtcgcggtc
481 cgtatcagtt catccatccc aacttgctgt tcgttttgtg tggtggtgtt tcgctttttt
541 gggaagagag gagaggaagc aatcattcgg cggcgacggc cccgcccact tgagttaaac
601 ttgattgctc tgtcgcatgg ccagcagtag cgaccatgga tccctcatgg aggactggat
661 gccaccaccc acacccagcc cgagaacact catgtcaagc ttcttgaatg aagattttgt
721 ctctggttca ttttccaata ttttcagtga tcatgagagc aacaaacccc aggatcagtt
781 tgagagaaac agagagcttg tggatttgag taaggaagtg ccttcccaat tcgcaagacc
841 cgcattccag agggatgctt ccctggatca tagcttggtc agtcctacac agagatcaaa
901 ctcgcatggt ggtttggcag agcgcagggc tgcgagggct ggtttcagtg tcccgaaaat
961 cgatacatcc cgtggtggtt catccacagt aattcgatcg cccgtggcaa ttccaccagg
1021 tcttagtcca acaacacttc tcgagtcacc ggttttcctt tacaacgcaa tggcacagcc
1081 ttctccaacc actggcacac tgccattttt gatggcttca aatgctaagt caacaatacc
1141 gtcagctacc aagatggacg aagattgcac atttggcaat gacactttct ccttccaacc
1201 gcatgtaggg tcgagacggc caaatttctc cgctgcagaa aagggtccca atgcttgtca
1261 ccaaaaccaa tcgctgtcga atatccatca gcgggaatcc agtcttcagt caagctttac
1321 tgcagtcaaa gatatcactg atgaaaaaaa cattaaaaca aagacatctg actccatgtt
1381 tggtgataac cactcttctg atgaacaaga tgatgagact aaccaaaatg gagaaaactc
1441 tatgccacct ccgaaccacc gttcaggtgt ccctctgtca cataccaatg atccagaagt
1501 gaatgtccta gagaaccgcg gttcacagac atgccataac tctgcatcct tgtgggacaa
1561 tgccaaaaat gattgccttc aagatgttca aagtgaagtt attgaaacaa gaacagctgc
1621 ttgtcttcca gtatcaacca attgtgatac atctatcatg gagtcccaag atgcagttga
1681 tgtgtcgtca acactatcta atgaggagga tgatagggca acgcatggca cggcttctat
1741 agagtgcaac ggggatggag atgagactga ttccaagaga aggaagctgg atgctttgac
1801 agctgcaact gctgctatta ccaccaccag taacattgac atgggagctg cggcatcgag
1861 aggtgtccgg gagcctcgtg ttgttgttca gacaacaagt gaggttgaca tccttgatga
1921 cggttaccgc tggcgcaagt atggacagaa ggttgttaaa ggaaatccaa acccaaggag
1981 ctattacaaa tgtacgcacc aagggtgttc ggtgcgcaag cacgtggaga gagcatcgca
2041 tgatctaaaa tccgtcatca cgacgtacga ggggaagcac aaccatgaag ttccagctgc
2101 cagaaatagt ggacatggga gctctggatc tggaaacgct ccatctgcac cgcaatctaa
2161 cggctctcag cgcaggcaag aacaagggca agccagcttc agccagtttg gtggcgcggc
2221 tcccttcagc tccttcgttc tcccaccaag aaaccaattt ggaccatcgg cgagcaattt
2281 cccctttggg atggtcccgc caggcatggc gattcccatg ccatctctag ggtctcttgc
2341 tccagcaaag atggctggtc atccatccac catgcagggc taccaggggc tcatgattcc
2401 ggaaggagag atgaagacag agcccatgtc gcagctcggc ttccccgcgg taaaccaatc
2461 ttcatcatcc ttccaacaga tgatgaacag gcctccatca tttggacctc agatgtaaat
2521 aataatatta aagaaagaaa agaaaatgat agatgtgctt cagcttctat acatggtagc
2581 aatgctacaa catagctttg ttgttctagc ttttacctgt tattttttct ttgggctttt
2641 attttttgga agcaaagaat gcagaagatg ttacccgttt tgtttatgtt gtaattggaa
2701 aaaaaaggtg gtggtagtgt tcaggacaaa aggcaaaatc attcaattgg aagtgctgat
2761 ggtg
//