LOCUS AK065064 3803 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013001J19, full insert
sequence.
ACCESSION AK065064
VERSION AK065064.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3803)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3803
/clone="J013001J19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 81..3110
/db_xref="Osa1:LOC_Os12g42310"
/db_xref="RAP-DB:Os12g0617900"
/note="(RAP Annotation release2) Similar to
Serine/threonine protein phosphatase BSL2 (EC 3.1.3.16)
(BSU1-like protein 2)"
/note="(Rice Genome Annotation Project)
serine/threonine-protein phosphatase BSL2, putative,
expressed"
/note="mapping to R12-TIGRv4S1-000819R (Chr.12: short
arm=26273262, long arm=26281926, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG89347.1"
/translation="MDVDSRMTTESDSDSDAAAQGGGGGGFGSETSSASPSAPGTPTA
MGAGGGAAPIAAAAIAAAASAAVVAGPRPAPGYTVVNAAMEKKEDGPGCRCGHTLTAV
PAVGEEGAPGYVGPRLILFGGATALEGNSATPPSSAGSAGIRLAGATADVHCYDVSSN
KWSRLTPVGEPPSPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRV
VVQGPGPGPRYGHVMALVGQRFLLTIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGE
GPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPR
YQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTTPRTGRYSA
DAAGGDASVELTRRCRHAAAAVGDMIYVYGGLRGGVLLDDLLVAEDLAAAETTNAANQ
AAAIAAASDIQAGREPGRYAYNDEQTGQPATITSPDGAVVLGTPVAAPVNGDMYTDIS
PENAVIQGQRRMSKGVDYLVEASAAEAEAISATLAAVKARQVNGEAEHSPDREQSPDA
TPSVKQNASLIKPDYALSNNSTPPPGVRLHHRAVVVAAETGGALGGMVRQLSIDQFEN
EGRRVIYGTPESATAARKLLDRQMSINSVPKKVIASLLKPRGWKPPVRRQFFLDCNEI
ADLCDSAERIFSSEPSVLQLKAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDY
LFLGDYVDRGQHSLETITLLLALKVEYPLNVHLIRGNHEAADINALFGFRIECIERMG
ERDGIWTWHRMNRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENLQRPITMEAGS
VVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMD
GFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAITSPETSPE
HHLEDTWMQELNANRPPTPTRGRPQAANNDRGSLAWI"
BASE COUNT 904 a 832 c 1100 g 967 t
ORIGIN
1 ggtgtgtgtg ttgcgtggtg gggaggaaga tctcgagcgg ttggaaaccc tagtggggag
61 ggagggagtg ggcggggggg atggacgtgg actcgaggat gacgacggag tcggactccg
121 actcggacgc cgcggcgcag gggggaggag gaggagggtt cgggagcgag acctcctcgg
181 cgtcgccctc ggcgcccggg acgccgacgg ctatgggggc aggaggggga gctgctccta
241 tcgctgctgc tgctatcgct gccgccgcgt cggcggcggt ggtggcgggc ccgaggcccg
301 cgccggggta cacggtggtg aacgcggcga tggagaagaa ggaggacggg cccgggtgcc
361 ggtgcggcca cacgctcacc gcggtgccgg ccgtcgggga ggagggcgcg ccggggtacg
421 tggggccgcg gctgatcctc ttcggcggtg ccaccgcgct cgaggggaac tccgccacgc
481 cgccatcctc ggccgggagc gccggaatcc gtcttgctgg tgctactgcg gatgtgcact
541 gctacgatgt ttcatcgaat aagtggagca ggcttactcc agttggtgaa cctccttcac
601 caagagcggc acatgtagcg actgctgttg gcaccatggt ggtcattcag ggtgggatag
661 gtcctgctgg tttatctgca gaagaccttc atgttctgga tcttacacaa caacgaccgc
721 gatggcacag agtggtggtt caagggcctg gccctggtcc tcgatatgga catgtgatgg
781 ctttggttgg gcagcgtttc ttgttgacaa tcggtggaaa tgatgggaag aggcccctgg
841 ctgatgtgtg ggcccttgat acagcagcta agccatatga gtggaggaaa cttgaaccag
901 aaggtgaagg accaccccca tgcatgtatg caactgcaag tgcccgttct gatggacttc
961 tattactctg tggtgggagg gatgctaata gtgtgcccct agcaagtgca tatggccttg
1021 caaaacacag ggatggacgc tgggagtggg caatcgcccc tggtgtctct ccatcaccca
1081 gatatcaaca tgcagctgtt ttcgtcaatg cacgacttca tgtctcagga ggggcccttg
1141 gaggcggtcg catggttgaa gactcctcaa gtgttgcagt gttggatact gctgctggag
1201 tgtggtgtga tacaaaatca gtagttacta ctccaaggac aggaagatat agtgcagatg
1261 ctgcaggcgg tgatgcttct gtagagctta cacgacggtg caggcatgca gctgctgcag
1321 ttggtgatat gatatatgtt tatggaggtc tacggggagg tgtgctgcta gatgaccttc
1381 ttgttgccga agatcttgct gctgctgaaa caacaaatgc agcaaatcag gcagctgcaa
1441 ttgctgcagc ctctgacata caagctggaa gagaacctgg taggtatgcc tacaatgatg
1501 aacaaacagg gcagccagct acaataacat ctcctgatgg agctgtggtt cttggaactc
1561 cagttgctgc tcccgttaat ggggacatgt atactgatat tagccctgag aacgctgtga
1621 tccagggaca aaggagaatg agcaaaggtg ttgattattt ggttgaagca tctgctgcag
1681 aggctgaggc aatcagtgct actttagctg ctgtaaaagc tcggcaagtt aatggtgagg
1741 cagagcattc acctgacagg gagcagtctc cagatgccac accaagtgtg aagcaaaatg
1801 caagcctgat aaaaccagac tatgctcttt caaataattc aacaccacct cctggggttc
1861 ggttacacca tagagcagtt gtggtagcag cagaaaccgg aggtgcctta ggtggcatgg
1921 ttaggcagct ctcaattgac cagtttgaaa atgaaggaag aagggtcatc tatggcactc
1981 ctgagagtgc aactgcagca aggaagttgc tagatcggca aatgtctatt aatagtgtac
2041 ctaaaaaggt aattgcatcc ctcttgaaac ctcgtggttg gaagccccct gtgcgaaggc
2101 agttcttttt ggactgcaat gagattgcag acctatgtga tagtgcggaa agaatatttt
2161 caagtgaacc aagtgtccta cagcttaaag ctccaattaa gatatttggt gatttgcacg
2221 gtcaatttgg tgacctaatg cgcttgtttg atgagtacgg tgctccttcg acagctggag
2281 acattgctta cattgattac ctcttcttgg gagattacgt ggatcgtggt cagcatagtt
2341 tggagacaat cactcttctc cttgcactta aggttgaata tcctcttaat gtacatttga
2401 ttcgagggaa tcatgaggcc gctgatatca atgctttgtt tgggttccga atagagtgca
2461 tagagcgaat gggtgagcgt gatgggatct ggacctggca tcgcatgaat aggctattta
2521 attggcttcc tttggctgcc ctaatagaga agaaaataat atgtatgcat ggtggtattg
2581 gccggtctat caatcatgtt gaacaaattg agaatcttca aagaccaatt accatggaag
2641 caggctcggt tgttctaatg gatcttctgt ggtctgatcc aactgaaaat gatagtgttg
2701 aaggacttag accaaatgcc cgtggcccag gccttgttac ctttgggccg gatcgtgtta
2761 tggagttctg caacaacaat gacttacagt taattgtgcg agcacatgag tgtgtgatgg
2821 atggttttga gcgttttgct caaggtcacc taatcactct cttctcagca acaaattact
2881 gtggtacggc aaacaatgcg ggtgcaatct tggttctagg aagagatctt gtagtagttc
2941 cgaaactcat ccatcctttg ccgcctgcca ttacatctcc cgagacctct ccagagcatc
3001 atcttgagga cacatggatg caggaactaa atgccaacag gccgccaact ccaacaaggg
3061 gccgccctca agcagcaaac aatgaccgag gctctcttgc atggatatag tagctttggc
3121 atgcgctgaa tttattcatt ccaagtcctc atcattgggt tctggctaag ctacatttat
3181 ccgttctgca cagaggcaga cgatctgtgc tcaagagacg tgctagccca caacaattgc
3241 caacttggag gtcgtttgca gaggagagct aagctacaga aagaaccaag ggtggagaaa
3301 cttcgccaat caccaccgac agcgctctcc aatttctttt cccaaatcat gagaagtaaa
3361 tgaacatatt cttggtcgtt catcggaaga tcctacctgc gaggcttcgc ccctgtatat
3421 actcagatga tgccccagcg gataggtgag tggggtgtat gtgttttggt caaccgattt
3481 gaggaacaga agggatagtg taactagtgg ttattgtact aggtattctt ttcctgtgtc
3541 tagattttgt ttttaccatg ttggaaaagt attggagtgg ccaaaggagt aaacttattg
3601 gatggggtcc atctagttgt tgtataatag ctgtctcacc tatttgtgtt atcacgcctt
3661 cctcccattt gtaatactac ctgtctctgg tgctgacatg atgtacaata ttatccttgt
3721 cgtcaaaatt ttgtgtagtg aacaaagttg gtgattgttt gatttgttag gggtggtaag
3781 agcagccttg tattgtactg tcc
//