LOCUS AK065048 1790 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013001I09, full insert
sequence.
ACCESSION AK065048
VERSION AK065048.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1790)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1790
/clone="J013001I09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1790
/db_xref="Osa1:LOC_Os01g17214"
/db_xref="RAP-DB:Os01g0279400"
/note="(RAP Annotation release2) Major facilitator
superfamily antiporter"
/note="(Rice Genome Annotation Project) carbohydrate
transporter/ sugar porter/ transporter, putative,
expressed"
/note="mapping to R01-TIGRv4S1-000541R (Chr.1: short
arm=9886327, long arm=9899515, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 419 a 410 c 449 g 512 t
ORIGIN
1 gggtgtagtt cagtcagttc cacacctctc cttcctttaa tttctctctg ctcgccggag
61 acagactagc ttagctagta ggagagggag gaactaatgg ccgccggaga caagaccggc
121 ggcgacgacg ctgcggcggc ggcggcggcg ccattgctgg tgtcggcggc ggggaggcgg
181 cggcggtgcc ccgggtgcct gacggaggag aggtgcaagg ccgacgccgg catcccctac
241 ctcaacttct tctacatctg ggtcgtctgc ctctgctcct cgttgccaat tcagtcgttg
301 tttccgtatc tgtacttcat gatcagggac ttgaaagtcg caaaggaaga gcaagatatt
361 gggttctatg ccggttttgt cggggctact tatttccttg gaagaactat cagtgcagtg
421 ccatggggca tttttgctga caaatatggg aggaagccct gcattgtgat cagtatcctc
481 tcagtgattg tgtttaacac actctttggc ctcagcacga cttactggat ggcaattgtt
541 accaggggat tacttggatt actctgtggt atactaggac caatcaaggc ctatgcttca
601 gaggtctgca ggaaggagca ccaagctctt ggaatttccc ttgtcacatc ctcgcgagca
661 atagctctgg ttgttggacc agctattgga ggatttcttt cgcagcctgc aaagaaatac
721 ccaaatcttt tctctgaaga atcggtattt gggaggtttc cctactttct cccttgcttc
781 gtcatatcgg tactagcagc aggagcatgt gttgcgtgta tttggcttcc ggaaaccctg
841 cacatgcacc atgatgacaa agaagtcatt gatgcactag aggcacaaga tgcgacttca
901 gacttaggag aaacaactaa agaatcagga tcagggagaa tgggccatac aaagagtttg
961 ctgaagaact ggcagctgat gtcagcaatt accctctact gtgtcttctc tctccatgat
1021 acagcttatc ttgagatatt ttcactctgg gctgtgagca gcagaaaata ccggggcctg
1081 agttttacat cccaggatgt tggtatcgtg ctagctattt ccggttttgg tgttttggtg
1141 taccaacttg cgatttatcc gcttcttgct aaatatgttg ggccaatcaa gccattccgt
1201 tatgcagcgg tcttgtctat acttctcctt tcaacatatc cattcatggc taacctgtat
1261 ggtctggagc tcaaagtact catcaacatt gcttcgcttt tgaaaaatat gttcgctgct
1321 acaattacta ttgcatgcaa catcctgcaa aacactgcag tgacgcaaga acaaagaggg
1381 gttgcaaatg gaatctctgt cactctgatg tcaatcttca aagccgtagc tccagcagca
1441 gctggaattt tgttttcatg ggcgcaaaag cacattactg ggttgttctt accaggtgag
1501 cagatcctgt tcctgatgct gaacatggtg tcagtgattg ggttcatcct gacattcaag
1561 ccatttttcg ccttgccgga tatgcgatga tgtgtagtta ggtaacaaaa aggccagaat
1621 ttatcagact tcagcctgga ttctaacctg caagaggaat tcatgtactg taccgcgtgt
1681 aatgttcagt tgtgtaatca gtttggtggt atctttgatt tctgtctgaa ctccgaacca
1741 ttggatggtc gaggcatatg ataaacagct aacgggatct tgtttcatct
//