LOCUS AK065037 2010 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013001H10, full insert
sequence.
ACCESSION AK065037
VERSION AK065037.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2010)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2010
/clone="J013001H10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2010
/db_xref="Osa1:LOC_Os08g09190"
/db_xref="RAP-DB:Os08g0191000"
/note="(RAP Annotation release2) Auxin Efflux Carrier
family protein"
/note="(Rice Genome Annotation Project) auxin Efflux
Carrier family protein, expressed"
/note="mapping to R08-TIGRv4S1-000221F (Chr.8: short
arm=5316424, long arm=5318770, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 433 a 500 c 513 g 564 t
ORIGIN
1 gactcttgct tgcctctctg cgtgatcccg atctgcagag ctcgccgccg gcgagctaag
61 ccccggaggc gcgcgcgtgg acgccccccc cccccttctc ctccgagcag cggccaccgg
121 tggccgccgc cgccatctcg gtctcgaatc gaggtggaca gaaaaaagtc atcagctttc
181 tgcatgcgat ttggtagata ctgacacgtc ttgattctgc tcaaggaagg cagctgattg
241 attggttggg agggcaaact aaaaggggtg taatcttggc caattcgata gaaaaacaca
301 gagatttagt ggcgagaatg gattggctgt ccgcgaacct gcaggtgaac cctcaggtga
361 ctgtccatgg ggactgggtg tcagcagtca tgccgctgat gaagctgctg tgcttgacgg
421 tcatcggcct tgtgctgtcc aacccgagga cgcagatcat ccccaaggcc accttcaagc
481 tcctgagcaa gctcgtcttt gcgctgttcc tgccatgcct gatctttgtc caccttggcc
541 agtcggtcac aattcagaac atcctcgact ggtggttcat cccggtcaac gtgctcatca
601 gcacggccat cgggtgcatt cttgggtaca tcgtcgcgct gatctgtcgc ccgccgccgc
661 agtttttcag gttcacggtg atcatgaccg gatttggcaa cacgggtaac ctcccaatcg
721 cgatcatcgg gtcggtttgc cataccacgg atcacccctt tggtcctgga tgccaccgca
781 agggtgtcgc ttatgtttcg tttgctcaat gggtcgctgt tattcttgtc tacaccttgg
841 tttaccatat gatggagcca ccgatgcaat tctacgagat tgtaggcgaa gggaacgaga
901 ttgtggaaga gcctgcacag atcagcaact acagtagatc tctgcttcat gaagcggaat
961 ggccagggat ggctgacaaa gaaacggagc actcaaagac gccattcatt gcacgggttt
1021 tcatgagtat ttcaggctct tcacagaata catttcctga tattgatttt gcagaagagg
1081 gcacttctgg tgctggacct agcagtccaa aatcgctaag gtgtttggcg gagccaaagg
1141 ttgtaaggag gatcagggtt gtagctgaga agactccaat tcagcatgtt ctccagccac
1201 caaccatcgc ctccttgctc gccattgtca tcggcatggt tcctttgttc aaagattttg
1261 tgtttgtgcc tgatgcacca ctgtcgttct ttacagacag tttggagatt ctagctcaag
1321 ccgttgtacc ctcggtgatg ttaattctag ggggcatgct tgcagaagga cccaaggata
1381 atgccttggg tatccggact atcactggta taattgttgc aaggctcctg attctcccgt
1441 gcattggcat cggtgtcgtc ctgctggcag atcggttgca tctgctttgt cgaggaagac
1501 cacatgtacc gctttgtgct gtcgctacag tactccaccc ctggtgccat cctgcttgga
1561 gcgattgcga gcctcagagg ttatgctgtc aaggaagcat cggcacttct attctggcag
1621 cacatttgtg cggtgctatc tctctccatc tacctgatcg tatatttcag gttgcttacc
1681 atttgaaaga tgatggtcgg ccgccttcca aaattggttt gtagcattca tcctcggaag
1741 tgatttctag ggagatgggt acttgaatgg attttcaacc acgtctcctt atggtcaagt
1801 gtatttatag tatatttaat ttttttttag cgatttatat ttcagataca tgtagaactt
1861 gagaacatga gatatgttct tgtcgttcat tagtgtcaat atattgctgt tcgcttgcac
1921 atttcttgat ccgattacag cattacagtt gctgctcaaa agttgtacaa gtactgctac
1981 attagaagtc aatatattgc tgtttgatgc
//