LOCUS AK065025 3843 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013001G10, full insert
sequence.
ACCESSION AK065025
VERSION AK065025.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3843)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3843
/clone="J013001G10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3843
/db_xref="Osa1:LOC_Os12g41950"
/note="(Rice Genome Annotation Project) auxin response
factor 6, putative, expressed"
/note="mapping to R12-TIGRv4S1-000807R (Chr.12: short
arm=25968810, long arm=25974732, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 938 a 929 c 981 g 995 t
ORIGIN
1 aaaaaaaaaa aaaaaaactc gaccaccacc tccaccactc acacctcgat ccggccatgg
61 cggcctagcc ctagcaccta gggttcgcgc ccccaccacc ctccccgccg tctcggagac
121 cgcgcgcccc cagctcccgc ctcgctgtcg cgccgcctga ttccgccgcc ggcgccgaat
181 gctacgccgt ttggtggtgg tggtggtcgt cgtcgcctga ttccgcgatc tcgtgagctc
241 cggggggtgc gcggttgcgg cggcggcgcc tgagaggaag gctggactcg tccgcggcgg
301 cggcggctgc gggctagtgt cggtggcgat ttgagggcgg cggtttgggt tagccgtcgc
361 cgagagtgaa ggtgctgtgt tttgagtgct tgggatgagc tgcgtgttga tctgatgaac
421 tcggggtcgg cggcgttctt cggtttctcc gctcacttgc tcccgccgtt ggcgaaaatc
481 cggttcttcg gatcgagttg cggtcgcctg ggtgtttttc atcagttttg ggtgaaaata
541 ctcgagctct gaggggggtg attggtttcc aagtttgatt gatttaaaga gtttgtgtgg
601 aattttttcg gggagatgaa ggggaggatt tgctgcgacg gtccaggttt tggttagttg
661 ttgagggaga aaaaaatgga agatatttct gggcgcaaga gaggaaggca ggtgtttgct
721 gctgctgctg ggagcatgat gggaagctga ccagcagctt ctccggtatc ctggtgcggc
781 ggagtttcgt gctctttggc gacgggtgca ctggtgattg gagatgaagc tctctccgcc
841 ggcgtcggcg gatatgccgc aggccttgcc ggagaacgac ggggaacaaa gatgtctgaa
901 ctcggagctg tggcatgcat gcgctgggcc ccttgtgtct ttgccagtgg tcaggagcag
961 ggtcgtctac tttccacagg gccatagcga gcaggttgcg gcatcaacta ataaggaagt
1021 tgatgctcaa atcccaaatt atccaaactt acctcctcag ttaatctgcc agcttcataa
1081 tgtcaccatg catgctgatg cagagacaga tgaagtttat gctcagatga cattgcaacc
1141 attgagcccg gaagagcaaa aggagccttt ccttccaatg gagttgggtg ctgctagcaa
1201 gcaacccact aattacttct gcaagacatt gactgcaagt gacacgagca ctcatggtgg
1261 tttctctgtt ccccgccggg cagctgagaa agtcttccct ccactattct ctgtaggatt
1321 tttcacagca gcctccggca caggagctga ttgcaagaga tttgcatgat aatgaatgga
1381 aatttcgcca tatatttcgt ggtcagccta aaaggcatct cctgacaaca ggctggagtg
1441 tgtttgtgag tgcgaaaaga ctagtagcag gagactctgt tatatttatc tggaatgata
1501 acaatcaact tcttttggga atacgtcgtg caaatcgcca acagactgtt atgccctctt
1561 ccgtgttgtc aagcgatagc atgcatatag gtcttcttgc agcagcagct catgctgcag
1621 ccacaaatag tcgcttcact attttctata accccagggc tagcccttct gaatttgtga
1681 ttccattggc caagtatgtg aaagctgttt accacacacg tgtatctgtt ggaatgcgtt
1741 ttagaatgct tttcgagaca gaggagtcaa gtgtcaggcg atacatgggt acaatcacca
1801 gcataagtga tctagattca gtgcgctggc caaactcaca ctggcgttct gttaaggttg
1861 gttgggatga gtccaccact ggtgataaac agccaagggt ttctctttgg gagattgagc
1921 ctttgacaac ctttccgatg taccccagtg cttttccttt aagacttaag cgtccgtggg
1981 cttcaggact gcctatgcat ggcatgttca atggtggggg aaatgacgat tttgcacgct
2041 attcttctct catgtggctt cgagacggaa atagaggaac ccagtcccta aattttcaag
2101 gacatggagt ctcaccatgg cttcagccaa gaatagattc tccattgctg ggccttaagc
2161 cagacacgta ccagcaaatg gctgcagcag cactggaaga aattcgatat ggggaccctt
2221 caaagcagca tccagctact ctgcaatacc aacagactca taatctgaac agtggattaa
2281 attctctgtt tgcaagccat gttctagggc aggtgcagtt tcaacctcag cagtcacccc
2341 tgcaagttgt tcagcaaggc cattgtcaga acactggtga ctctgggttc cttcaaggtc
2401 agcttccacg gctgcagttg cataacactc agcagctgct aaaggagcaa gagttgcagc
2461 agcagcaaag acagcatgtt ttacaagagc aatctagtca agagatgcaa cagcagctcc
2521 catctagtga tcatcatgtt gctgatgtag cttctgagtc tggatctgct cctcaggcac
2581 aatcatcatt gcttagtgga tcatcattct acaatcagaa cctcttagaa ggaaatagtg
2641 atcccccttt acatctacac aacaatttcc acaacttctc taaccaggaa gcctcaaacc
2701 ttcttatttt gcctcgaagt agccaattaa tggcatcaga tgggtggcct tcaaagcgat
2761 taactttaga atctgctgtt catcctgaag ctccgtccat gcaccccaag attgagaaag
2821 taaatcacca gggtatatct cattttcctg gcgcctttcc accacaatca gcaagaggct
2881 gttccatcgt ccaggattgc agggcagatg ctgagaaccg cctactttca tcatcatttg
2941 aactccagga tggcatgaca agcatcataa ctgatgctaa cagagaaact gatactatgg
3001 ccataccttt gttgagatat agtggtgcag atttgacaac tgaaaacacc ttagcaacct
3061 ccaattgttt aggtgaatct gggacgttca atcctcttaa taacatatct gtaaatccat
3121 cacaaggagc aacctttgtg aaggtttaca aatcagggtc ccttgggaga tcacttgaca
3181 tctccagatt cagcagctac tgcgagttac gtagtgagct tgagcgtctc tttggtcttg
3241 aaggccaact ggaggaccct gtaagatcag gctggcagct tgtatttgtc gaccgggaaa
3301 atgacattct tctcgtcggc gacgatccat ggcaggagtt tgcaaatagc gtatggtgca
3361 tcaaaatact ctcgccacag gaggtgcagc agttggttcg tggtggagac ggccttctgt
3421 cctcacctgg agcaaggatg cagcagagca atgcctgcga cgactattct gcaagccaca
3481 acatgcagaa tatcgccgga aacattgcat ctgtagcgcc tctggactac tgagatgtag
3541 accagaatca aaactaagca cccttaagac tgcagggtca ccattcgtga tcgcctgcat
3601 tccatgcgat cttcactagt cctgtccgaa tcagtagcaa ctcagtcaat aatatagcta
3661 gatgatccgt tgtattccat ctgatcatgg acatgctgta tgatagctgc tttagctcta
3721 ttaaatctct aatggcaggc aactaggcaa gaacagttct atgatgaatg atggcagtcg
3781 ctgtagaatt gaccttattc tgtagctata atatgatgtc tagaactgat gattccaatt
3841 tcc
//