LOCUS AK064916 1492 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013000M17, full insert
sequence.
ACCESSION AK064916
VERSION AK064916.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1492)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1492
/clone="J013000M17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1492
/db_xref="Osa1:LOC_Os07g34570"
/note="(Rice Genome Annotation Project) thiazole
biosynthetic enzyme 1-1, chloroplast precursor, putative,
expressed"
/note="mapping to R07-TIGRv4S1-000671F (Chr.7: short
arm=20722886, long arm=20724376, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 282 a 498 c 439 g 273 t
ORIGIN
1 gactcacaca cactctcctc atcccagagc aagaagctca gctcctcctc ctctcgcatg
61 gcagccatgg ccaccaccgc gtccagcctc ctcaagacct ccttcgctgg cgcgcgcctc
121 cccgccgccg cccgcaaccc caccgtctcc gtcgcgccgc gcaccggcgg cgccatctgc
181 aactccatct cgtcgtcgtc gtccactccc ccctacgacc tcaacgccat caggttcagc
241 cccatcaagg agtccatcgt gtctcgcgag atgacccggc ggtacatgac cgacatgatc
301 acctacgccg acacggacgt cgtcgtcgtc ggcgccggct ccgcggggct ctcctgcgcg
361 tacgagctct ccaaggaccc ctccgtcagc gtcgccgtca tcgagcagtc ggtgtccccc
421 ggcggcggcg cgtggctcgg cgggcagctg ttctccgcca tggtggtgcg caagccggcg
481 cacctgttcc tcgacgagct cggcgtcgcg tacgacgagc aggaggacta cgtcgtcatc
541 aagcacgccg cgctcttcac ctccaccgtc atgagccgcc tcctggcgcg ccccaacgtg
601 aagctgttca acgccgtcgc cgtcgaggac ctcatcgtca aggagggccg cgtcggcggc
661 gtggtcacca actgggcgct ggtgtcgatg aaccacgaca cgcagtcgtg catggacccc
721 aacgtgatgg agtccagggt ggtggtgagc tcctgcggcc acgacgggcc gttcggcgcc
781 acgggcgtca agcggctgca ggacatcggc atgatcgacg ccgtgcccgg catgcgcgcc
841 ctcgacatga acaccgccga ggacgagatc gtccgcctca cccgcgaggt cgtccccggc
901 atgatcgtca ccggcatgga ggtcgccgag atcgacggcg ccccgagaat ggtacgcacc
961 aaaaaaacat caaactcttc accataatct ctcccccgtt cttggatttg aacaaattcg
1021 ttgttgcagg gcccgacgtt cggagccatg atgatctccg gccagaaggc ggcgcacctg
1081 gcgctgaagg cgctcggccg gccgaacgcc atcgacggca cgatcaagaa ggcggcggcg
1141 gcggcggcgc acccggagct gatcctggcg tcgaaggacg acggcgagat cgtggacgcc
1201 tgagcgaata gaacagggta aaaaaaaatc cgcaagacgt ggtggtgaca cggaggagtt
1261 ggggacgaga agaagatgtg gactttcccc tgtgtttttt tttttcggga tttgcattga
1321 tccccttgtt tgttttagct ctggatgttg attagcgtct tgttcatagc acttccactg
1381 ccaccgtgtg tgtgtgctct gcttgcctga tgagggcaag aaaacttcca tggatccgtc
1441 tctctgggag gaatgaataa aaaggatgag gaaataaaaa tgattcagtg cc
//