LOCUS AK064884 2017 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013000K07, full insert sequence. ACCESSION AK064884 VERSION AK064884.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2017) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2017 /clone="J013000K07" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2017 /db_xref="Osa1:LOC_Os05g04340" /note="(Rice Genome Annotation Project) glycogen synthase kinase-3 homolog MsK-1, putative, expressed" /note="mapping to R05-TIGRv4S1-000101R (Chr.5: short arm=1952090, long arm=1955860, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 534 a 472 c 465 g 546 t ORIGIN 1 gtctccctcc gaatcctccc ccgcattccg cgccggagct gaggagggac agcgagccag 61 cgagggaggt ggggcaatcc agcgagcgcc agatcgtgcc gccagccccg ctccgtcctc 121 tctccggcga ccctccgccc cgcctgatcc cgtggtggat caactacaac tcatctttag 181 gaaagcctct tgaacattag ccttgtgtgc ctttcaacag tatggcctcg gtaggtgtgg 241 tgcgttcttc cttggggttt gagaacgaaa caagtacaag tggcgatgcc gaccgacttc 301 cgaatgagat gagcaatatg agtataaggg atgataataa ggacattgac gacatagttg 361 tcaatggcaa tgggacagaa cctggtcatg ttattgtgac aagcattgat ggaagaaatg 421 gacaggctaa acagaccatt agctacatgg ccgagcgtgt cgtaggtcat ggatcctttg 481 gaactgtttt ccaggccaag tgcctggaaa ccggtgagac tgtggctata aagaaggttc 541 ttcaagacaa gagataagaa ccgtgagctg caaacaatgc gagttcttga ccacccaaat 601 gtggtgtcac taaagcattg ttttttctca aagactgaga aggaggagct ttacctcaat 661 ttggtgcttg agtatgtgcc agagactgct caccgtgtaa ttaaacatta caacaagatg 721 aaccaacgca tgccattgat atatgcaaaa ctatacatgt atcagatatg cagagctttg 781 gcgtacattc acaacaccat tggcgtgtgt cacagggata tcaagccaca aaatcttctg 841 gtgaacccac atactcatca gctgaaatta tgtgacttcg gcagcgcgaa agtcttggta 901 aaaggagaac caaatatttc ttacatctgt tcaaggtact acagagctcc agagctcata 961 tttggtgcta ctgaatacac aacagcgatt gatgtttggt ctgccggttg tgtgcttgct 1021 gaactcctcc tggggcagcc tctattccct ggcgacagtg gcgttgatca gcttgttgaa 1081 atcatcaagg ttctgggtac ccctacacga gaggagatta agtgcatgaa cccaaattac 1141 accgagttta aatttccgca aatcaaagct cacccatggc acaagatctt ccataaaaga 1201 atgcctgctg aagcagtcga tctcgtctcc aggcttttgc agtattcacc atacctccgg 1261 tccactgctg tgagtgttgt cgttgcacta tttgagccaa caccattttt tagagaaagt 1321 tttagttctt ggcatcacta ttgtgttaca tttttctaat tacttcatca tacaaacatg 1381 cactgccttg ccaagtacta gtagttacag attgtgcatt tctttatttg ccattacagt 1441 cggaagcatt gatccatccc ttcttcgatg aactccgtga tccaaacacc cgcttaccga 1501 acggccgttt ccttcctcct ctcttcaact tcaagcccca tgaactgaag ggtatgccaa 1561 tggaattcct ggtgaagctt atccccgaac atgctcgaaa gcaatgcgcg tttgtaggat 1621 ggtgatttct gaggtcagca tgaaaactag ttcagaattt cttcaccgtc ctccattaga 1681 aagcagagat gaaccctgtg tgcagccatt tgggaaagct ggtgcatatg gaagtggaac 1741 tacatttttt tgtccgagat tctgacgccg cgtattcttt tcccccctca cactttgctg 1801 ctgccggtgt aaccaaaaaa tcatccacgg ttctgtaaag ttgatgaaga agagtgtaaa 1861 atcaggttga aaactgaatt cgatcggttt gtcaagattg tagcaacatg caaggaagga 1921 tgttgcacac tttgtatggc aatgttcgtt cggtccaaat atttggacat ggatcgagag 1981 gctattcatt taattgtact tgctgctaca tgttctt //