LOCUS AK064859 3546 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013000H14, full insert
sequence.
ACCESSION AK064859
VERSION AK064859.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3546)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3546
/clone="J013000H14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3546
/db_xref="Osa1:LOC_Os11g16290"
/db_xref="RAP-DB:Os11g0264300"
/note="(RAP Annotation release2) Plant regulator RWP-RK
domain containing protein"
/note="(Rice Genome Annotation Project) NIN-like protein
2, putative, expressed"
/note="mapping to R11-TIGRv4S1-000375R (Chr.11: short
arm=8948082, long arm=8955371, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 993 a 742 c 864 g 947 t
ORIGIN
1 gattccattc ccttttctcc tcctcctcct cctcctcacc gccggcggcg agcggccggc
61 cggcgagcag agcagagcag aggagagagc cgacctccat ctgggctcca atcgaagctg
121 aagcgcctcg tcgtagtttg ggcaaaagaa gttttgattt tttttattta ttttgggtgc
181 tgaggaagag tgtaattaag ctgtgaggat tgagaagatg gatggaggtg ggacgccgga
241 tggggatccg gtgccggaca tggacatgct catgctgtca tcagcgctcg atggcctcga
301 cagctacacc gacctcgtcg cgggttcatc ggtagccgac agcatcttct cagctcttac
361 ctgtttccca ccatcacaag aacgattgct gcacgtctcg actcctgtgg gttctaattc
421 taggcaagat gattctgatg tttccatcac taaggagggt acaacaacaa gaagaggtga
481 ttgcgccgcc ggattagctt caggtgagcc ggtggccgcg ggaattggct ctgtcccgaa
541 gccgttcgac ggcgtcacac tgacggagag gatgctcagg gcgcttgcga tgctcaaaga
601 ggcgtcgggt ggcgaagcga tccttgtgca ggtctggatg cctgtgagga atggggagca
661 gcatgtgctg actacctctg accagccgtt cttgctcgat cagaagctta cgggatacag
721 ggaagtctcc aggcagttca cattctcggc tgaagaagga cccggtctgt tccccggatt
781 gcccggccgg gttttcatgt ccggcatgcc agagtggacg tcgaatgtga tgtactatca
841 tggctcggag tatttgaggg ttgattatgc taggcgccac gaggtccgtg gatcccttgc
901 gatgccggtt ttcaactcaa gtggtgggtc ttgctgtgca gtgttagaag tagtaatgac
961 acgagagaag gataactttt gcttagagat ggtcaatgtt tcgaatgctc tgcagagttc
1021 tataatttct gatgaggcct ttcaaatgat taacttcggg tgaattccta tttctcctac
1081 ccttggtttc acacagacta catctggtct ttttcttaaa gagaccataa aggtattttc
1141 tatctcgaga aaaaataatc tatagtttcc tcgtctttga ggatacaagg tttgtactat
1201 cctaggagga ttaatcagca ctctcctgta ctgatccctc cctagtctgc tctttgtcct
1261 tggatttgat gctaccaata tacatttcac actttggttg ttccaggcct tcaataaccc
1321 attattcctc ctttgtgctg cccaacgtta cgcccaattg caatgcaata ctgctaagta
1381 cctcttcaaa gaattaagta ctgtaggtca tatgtttgcc ttccagtttc acattccaaa
1441 tctatgtgtt tcactaagtc ggatcaatat catgtactgg agcaagaaga atgattggaa
1501 gcataaatag tctgttcagt taagcactgt caatgcatgg agacattctc agagctattc
1561 aagggaccag aaattagcat tgatggaaat attcgatgtt ctgcaagctg tttgtcaagc
1621 acacttgcta cctttggcac ttgcatggat tccagtttgc tccaaaagag atgtgcttgt
1681 gtcagtagaa tatggtgcaa attttggtaa aaggaacaaa gaagtgcttt gcatagagga
1741 atctgcatgt tatgtcaatg acacgagaat gcgtgatttt gtccaagtct gtgctgaaca
1801 cccccttgag aaaggacaag gtgtcgctgg aaatgcatat ttatcaaata atcccttctt
1861 ctcatctgat gtgaaggatt atgatatgca cgcttatcca cttgtcaatc atgcccgtaa
1921 atttggtctt catgctgctg ttgcaattag gctgcagagc acatacacca aaaatgatga
1981 ctatgtgctt gagttttttc ttccagtctt gtgcaaaggt ggtggagaac aacagctctt
2041 acttgacagc atatctgcga ctatgcggag agtatgcaaa agtctgagaa ctgtttcaga
2101 tgctgagttg aaggaagatg ttacaagaaa gccatcaaat gaaaatcgat caggaacaag
2161 atgcccttca cctgttaacc ttatttattc aggccgagaa attgatgtat cgaatgaaac
2221 aaaaacaaat acgcctttgg aatatcagat agagggcatt gatgaacaac tatcagatac
2281 aaaaagtact aacaagttaa taaagtgtag caatgcatcc gacggagaga aaagacgcag
2341 ctcaacagag aagagtgtta gcttaagtgt cctccagcag tacttctctg gcagcctgaa
2401 agatgctgca aagagtattg gtgtttgtcc tactacgctg aaaaggatat gcagacaaca
2461 tggaatatca aggtggccat ctcgtaagat aaagaaggta aaccgatccc taaagaagat
2521 ccagaacgtc ataagttcag tacatggagt cgagggagtg ctgaaatatg atccttccac
2581 tggatgcctt gtttcatctg tttccccttc catagagcct gtattgatga atgttgaaca
2641 caaagagaac atgcaggcca agatgtactc cacaaactgc agaataagca aaatggtgaa
2701 attaattttg acatggacga tggagaatta tttcgaaact cacattctac cagaacattg
2761 agtggggcat tctgtgagga tatgccaaat ggtttatatg ttgcaaggga aatgacttgt
2821 gttgcgaaaa ctggcacgag gacggagaga ctggagcaca aaccatcatc aagggattct
2881 ttttctgcgc cacaagaata cagaatggag agtgagactg acaagagcaa taagaattcc
2941 aaacaaagcc taccgtcctc ttccagcatg acagattgct ccacatcaag cggcgaaact
3001 ttcaagagca tcaagagtca gtcagctaac gaaagcaaca aaaccgtcgt cgtaaaggcg
3061 agctacaaga atgacaccat aaggttcaaa ttgctaccat ccatgaaata cgagcagctg
3121 ctcgaggaaa tagcgaagag gctgaaactg tcaattggcc tatttcagct caagtacaaa
3181 gacgatgagg gtgactgggt gattttagcg agcgatgcgg atctccagga atgcctcgag
3241 atacttgaca ccaccaggtt gcgtatcttg aagcttcagg tgcaagatgt tgtgtgtcct
3301 atcggaagtt cgtcaggtag ctgctccatg ttacgtccat aggttaggat actactacaa
3361 atgcaaaaaa tgagaaacca atcgtggagt tctacttatt ttgagtaatt gtacaaaagg
3421 acgtaggtat cttgaggaaa gctaaggtgc tagttttggt ttatgatctt gaatattcac
3481 agtatggtgc tttgaaacat gtacatattt atgaaacccg gtgcaataga gtcgaaggat
3541 gtttgc
//