LOCUS AK064850 1508 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013000H02, full insert
sequence.
ACCESSION AK064850
VERSION AK064850.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1508)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1508
/clone="J013000H02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 109..1266
/db_xref="Osa1:LOC_Os03g11570"
/note="(Rice Genome Annotation Project) 26S proteasome
non-ATPase regulatory subunit 13, putative, expressed"
/note="mapping to R03-TIGRv4S1-000416F (Chr.3: short
arm=5979025, long arm=5982724, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG89239.1"
/translation="MALQFVESQREARPELADPYADLADLYQRKLWHQLTLKLDHFLQ
LPAAQTGDTLIQLYNNFITDFETKINLLKLAHFAVIASRQYPDKDAAISFLEGVITKL
RETKDLRINEPILYVKMQIAAINLEKGNQKECKKLLDEGKSTLDSMTDVDPTVHASLY
WISSQYHKARQEFAEFYKNALLYLAYTTVESLSESFKLDLAFDLSLAALLGDNIYNFG
ELLAHPIINSLIGTKVEWVYHMLQAFNTGNLALYQELCRVHNAALSAQPALVQNERKL
LEKINILCLMEIIFSRASEDRTIPLSVIAERTKLSISDVEYLLMKSLSVHLIEGIIDE
VDSTVHVSWVQPRVLGIPQVKALRERLDAWVGKVHTTLLSVEAETPDLVAA"
BASE COUNT 365 a 395 c 361 g 387 t
ORIGIN
1 ggttgttcgc ctccgctcgc cgcgcctgca gatccccctc tcgcctcctc tcctctcctc
61 cccaaaccct agcgagcgac caactcctgg gtggggggat ttttctccat ggcgctgcag
121 ttcgtcgagt cgcagcgcga ggcgcggccg gagctcgccg acccgtacgc cgacctcgcc
181 gacctctacc agcggaagct ctggcaccag ctcaccctca agctcgacca cttcctccag
241 ctccctgccg cgcagacggg tgacaccctc atacagctct acaacaattt catcactgat
301 ttcgagacga agatcaatct tctcaaactt gcgcatttcg cggtcatcgc ttcgcgccag
361 taccccgaca aggatgctgc tataagtttc ctcgaggggg taatcacaaa attgcgcgag
421 acaaaggacc tgcgcatcaa tgaacccatt ctctacgtca agatgcaaat cgctgcgatt
481 aacctggaga agggaaatca gaaggagtgc aagaaacttt tggacgaagg aaaatctact
541 ctagatagca tgactgatgt tgatcccaca gttcatgcta gcctctactg gatatcatct
601 cagtaccata aggctcgcca agaatttgct gagttctaca agaatgccct tctgtatctg
661 gcttacacta ctgtagagtc actctctgag tctttcaaac tggatttggc atttgatctc
721 tcccttgcag ccttgcttgg tgataacatc tacaactttg gggaattgtt agctcacccg
781 attatcaaca gtcttattgg aaccaaggtg gagtgggtct atcatatgtt acaagcattc
841 aacaccggca acctagctct ctaccaagaa ctatgtaggg tccacaatgc tgctctcagt
901 gctcagccag ctttggtgca gaatgaacgg aaactgctag agaagatcaa cattctatgt
961 ctgatggaga taatctttag ccgggcgtca gaagacagaa ctatcccatt aagtgttata
1021 gccgagcgca ctaagctttc tatcagtgat gtggaatatc ttcttatgaa gagcctctcg
1081 gttcatctta tagaggggat aattgatgag gtggacagca cagttcacgt gtcatgggtc
1141 cagcctagag tacttggaat tccacaggtg aaggcgttgc gcgagcggtt ggacgcctgg
1201 gttggaaaag tgcataccac cctgttgtcc gttgaggcag agacgcctga tcttgtagct
1261 gcataactta tccaaccttc cttttgctat atggccttgg tcaccaaggg tgcggtgcga
1321 aaagagagat gatctggctg tggtggctgt agttttctgg gtgatgaaaa catgttgcct
1381 tgaacgtttc cctggcaccc tattgatcag gacctgtaat ttcatttctc tttaaatcct
1441 ctggacgttg aggcctggag cttgatgcat tgatcacgga aaaagcacaa gcggatcaaa
1501 agtttcat
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